Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g0971 ATGGCTGATTCACCTCCTCCCCCTCCCTTCTCCACCGCCGATTCCTCCACTAATTCAACCGACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTTACCGAATTCGGATGGAATTTCCACTCTCTTCAACCTCAACAACCTTCTCGATTCCAATCTCAACGGATCGACGCCGATTTGCCTCCAACTTCCACTCCGGTAATCGATGACGCTGCCGGATTACAGAGCCCTGACGCTCCTCTTCCACTCGCCTCTAATCCTTCTTTGTCTTCTAGCTCTAGCGGAGAGCCGACGGAGAAACAGCCTGAGATTATTCCGCGGAAGGTCAAAAAGAAGGGGCAGAAGCGAATTCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTCGATCATCTTGAAGATGGCTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAGAACAGTCCATTCCCTAGGAGTTACTACAGGTGCACAAACAGCAAATGCACAGTGAAGAAAAGAGTAGAACGGTCTTGTGAAGATCCAAGCATTGTGATAACAACATATGAAGGACAACACTGTCATCACACCGTTGGATTCCCTCGAGGTGGATTAAACATAGCTCATGAAGCTGCTTTTGGGTCTCAATTTTCACCTCAAATCCCACAGTTTTTTTACCCTGATCATCAAACTCACTCACCACCCACAACTAACATTAACCCTCCCCCCACTCCCAATGACCAGCCACACGATTTGGCTCCATCATCATCCTCCAATGCACTATCCTTAGAACAACAAGATCCAACAAACTCAAACCTCCAAGTTCCTTCCGACGAAGGCTTGCTCGGCGCTATCGTCCCACCCGCCATGATGCGTAGAACATAA 876 48.74 MADSPPPPPFSTADSSTNSTDALFFFPPDSDSTILTEFGWNFHSLQPQQPSRFQSQRIDADLPPTSTPVIDDAAGLQSPDAPLPLASNPSLSSSSSGEPTEKQPEIIPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPSIVITTYEGQHCHHTVGFPRGGLNIAHEAAFGSQFSPQIPQFFYPDHQTHSPPTTNINPPPTPNDQPHDLAPSSSSNALSLEQQDPTNSNLQVPSDEGLLGAIVPPAMMRRT 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22005159 22009934 - CmPI595203_08g009710.1 Cmu08g0971 422457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g0971 291 MobiDBLite consensus disorder prediction 220 278 - -
Cmu08g0971 291 MobiDBLite consensus disorder prediction 1 26 - -
Cmu08g0971 291 Gene3D WRKY domain 122 188 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g0971 291 MobiDBLite consensus disorder prediction 47 118 - -
Cmu08g0971 291 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 88 230 IPR044810 GO:0003700(InterPro)
Cmu08g0971 291 SUPERFAMILY WRKY DNA-binding domain 127 193 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g0971 291 MobiDBLite consensus disorder prediction 47 62 - -
Cmu08g0971 291 FunFam WRKY transcription factor 57 121 195 - -
Cmu08g0971 291 MobiDBLite consensus disorder prediction 247 274 - -
Cmu08g0971 291 MobiDBLite consensus disorder prediction 83 101 - -
Cmu08g0971 291 ProSiteProfiles WRKY domain profile. 130 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g0971 291 Pfam WRKY DNA -binding domain 136 192 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g0971 291 SMART WRKY_cls 135 194 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0095 Cmu-Chr2:1079129 Cmu08g0971 Cmu-Chr8:22005159 1.20E-27 dispersed
Cmu04g0848 Cmu-Chr4:22980902 Cmu08g0971 Cmu-Chr8:22005159 3.40E-21 dispersed
Cmu08g0971 Cmu-Chr8:22005159 Cmu09g2145 Cmu-Chr9:37534896 9.90E-37 dispersed
Cmu08g0971 Cmu-Chr8:22005159 Cmu06g0427 Cmu-Chr6:4857912 5.60E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6673 PF03106 WRKY 8.80E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g0971 - - - 0.0