Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g0971 | ATGGCTGATTCACCTCCTCCCCCTCCCTTCTCCACCGCCGATTCCTCCACTAATTCAACCGACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTTACCGAATTCGGATGGAATTTCCACTCTCTTCAACCTCAACAACCTTCTCGATTCCAATCTCAACGGATCGACGCCGATTTGCCTCCAACTTCCACTCCGGTAATCGATGACGCTGCCGGATTACAGAGCCCTGACGCTCCTCTTCCACTCGCCTCTAATCCTTCTTTGTCTTCTAGCTCTAGCGGAGAGCCGACGGAGAAACAGCCTGAGATTATTCCGCGGAAGGTCAAAAAGAAGGGGCAGAAGCGAATTCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTCGATCATCTTGAAGATGGCTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAGAACAGTCCATTCCCTAGGAGTTACTACAGGTGCACAAACAGCAAATGCACAGTGAAGAAAAGAGTAGAACGGTCTTGTGAAGATCCAAGCATTGTGATAACAACATATGAAGGACAACACTGTCATCACACCGTTGGATTCCCTCGAGGTGGATTAAACATAGCTCATGAAGCTGCTTTTGGGTCTCAATTTTCACCTCAAATCCCACAGTTTTTTTACCCTGATCATCAAACTCACTCACCACCCACAACTAACATTAACCCTCCCCCCACTCCCAATGACCAGCCACACGATTTGGCTCCATCATCATCCTCCAATGCACTATCCTTAGAACAACAAGATCCAACAAACTCAAACCTCCAAGTTCCTTCCGACGAAGGCTTGCTCGGCGCTATCGTCCCACCCGCCATGATGCGTAGAACATAA | 876 | 48.74 | MADSPPPPPFSTADSSTNSTDALFFFPPDSDSTILTEFGWNFHSLQPQQPSRFQSQRIDADLPPTSTPVIDDAAGLQSPDAPLPLASNPSLSSSSSGEPTEKQPEIIPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPSIVITTYEGQHCHHTVGFPRGGLNIAHEAAFGSQFSPQIPQFFYPDHQTHSPPTTNINPPPTPNDQPHDLAPSSSSNALSLEQQDPTNSNLQVPSDEGLLGAIVPPAMMRRT | 291 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22005159 | 22009934 | - | CmPI595203_08g009710.1 | Cmu08g0971 | 422457 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g0971 | 291 | MobiDBLite | consensus disorder prediction | 220 | 278 | - | - | |
Cmu08g0971 | 291 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cmu08g0971 | 291 | Gene3D | WRKY domain | 122 | 188 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g0971 | 291 | MobiDBLite | consensus disorder prediction | 47 | 118 | - | - | |
Cmu08g0971 | 291 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 88 | 230 | IPR044810 | GO:0003700(InterPro) | |
Cmu08g0971 | 291 | SUPERFAMILY | WRKY DNA-binding domain | 127 | 193 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g0971 | 291 | MobiDBLite | consensus disorder prediction | 47 | 62 | - | - | |
Cmu08g0971 | 291 | FunFam | WRKY transcription factor 57 | 121 | 195 | - | - | |
Cmu08g0971 | 291 | MobiDBLite | consensus disorder prediction | 247 | 274 | - | - | |
Cmu08g0971 | 291 | MobiDBLite | consensus disorder prediction | 83 | 101 | - | - | |
Cmu08g0971 | 291 | ProSiteProfiles | WRKY domain profile. | 130 | 195 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g0971 | 291 | Pfam | WRKY DNA -binding domain | 136 | 192 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g0971 | 291 | SMART | WRKY_cls | 135 | 194 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0095 | Cmu-Chr2:1079129 | Cmu08g0971 | Cmu-Chr8:22005159 | 1.20E-27 | dispersed | |
Cmu04g0848 | Cmu-Chr4:22980902 | Cmu08g0971 | Cmu-Chr8:22005159 | 3.40E-21 | dispersed | |
Cmu08g0971 | Cmu-Chr8:22005159 | Cmu09g2145 | Cmu-Chr9:37534896 | 9.90E-37 | dispersed | |
Cmu08g0971 | Cmu-Chr8:22005159 | Cmu06g0427 | Cmu-Chr6:4857912 | 5.60E-40 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6673 | PF03106 | WRKY | 8.80E-25 | CL0274 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g0971 | - | - | - | 0.0 |