Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1004 ATGAGAACGGGGAAAAGCAATCAGGACGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAGCATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGCGATCAAAAGAGAGATACTGCTTCATTTTTATTGGAGGTGATTGAATATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACAGTCTGTAAAAAATGGTTCCGCTTCAGGACCAACGTATTCTGGGAAGTTTGATGACAATAGCATTTCAATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTTAGGCAGAGATATTCTACAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATTTACATGCTTCTATCCGTAGTGATGGCGTTCTTGATCAATCTCTCCACATTCCAATTTCTGATGCACAGACAACTGAGTGTCCCATCACCAACAATGCATCAAATCAACCGGAAGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGTGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGATTGGATTTGTCGCAAGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAATAAGGGGATGCCATTTGGAACGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCAGCCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGCGAAAAAGCGGCTAAGAACATGA 999 44.54 MRTGKSNQDDEEYEEDELVAKREGPSSTSNAISSIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPQSVKNGSASGPTYSGKFDDNSISISPAMLASSQNPLDSHLGRDILQDADITNKVPLPMSLEGNLHASIRSDGVLDQSLHIPISDAQTTECPITNNASNQPEEMAIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPFGTPIFKETGNPPSSHPAMANVGDLGSGDDSEQAKKRLRT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22269956 22275142 - CmPI595203_08g010040.1 Cmu08g1004 422490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1004 332 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 332 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Cmu08g1004 332 MobiDBLite consensus disorder prediction 44 62 - -
Cmu08g1004 332 MobiDBLite consensus disorder prediction 297 332 - -
Cmu08g1004 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
Cmu08g1004 332 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Cmu08g1004 332 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Cmu08g1004 332 FunFam BHLH domain class transcription factor 47 119 - -
Cmu08g1004 332 MobiDBLite consensus disorder prediction 23 43 - -
Cmu08g1004 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Cmu08g1004 332 CDD bHLH_AtBIM_like 48 124 - -
Cmu08g1004 332 MobiDBLite consensus disorder prediction 1 62 - -
Cmu08g1004 332 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1588 Cmu-Chr6:27075803 Cmu08g1004 Cmu-Chr8:22269956 2.20E-58 dispersed
Cmu07g1582 Cmu-Chr7:30982788 Cmu08g1004 Cmu-Chr8:22269956 2.30E-51 dispersed
Cmu04g1191 Cmu-Chr4:26487569 Cmu08g1004 Cmu-Chr8:22269956 3.70E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6676 PF00010 HLH 1.80E-13 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1004 - - - 0.0