Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1011 ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCCGCCGCCCCCGCCGGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCCCCCGCTGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAATTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA 534 58.99 MSSAHSPSSSSSSSSPTAAAPAGVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNAR 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22352225 22352758 + CmPI595203_08g010110.1 Cmu08g1011 422497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1011 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 159 IPR013083 -
Cmu08g1011 177 PANTHER RING-H2 FINGER PROTEIN ATL67 13 176 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Cmu08g1011 177 Pfam Ring finger domain 112 154 IPR001841 -
Cmu08g1011 177 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Cmu08g1011 177 SMART ring_2 112 153 IPR001841 -
Cmu08g1011 177 CDD RING-H2_EL5-like 112 154 - -
Cmu08g1011 177 SUPERFAMILY RING/U-box 111 159 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0138 Cmu-Chr5:1220116 Cmu08g1011 Cmu-Chr8:22352225 2.10E-24 dispersed
Cmu05g0994 Cmu-Chr5:9107581 Cmu08g1011 Cmu-Chr8:22352225 1.20E-23 dispersed
Cmu07g1486 Cmu-Chr7:30021457 Cmu08g1011 Cmu-Chr8:22352225 5.90E-24 dispersed
Cmu08g1011 Cmu-Chr8:22352225 Cmu10g2549 Cmu-Chr10:32221308 2.40E-25 dispersed
Cmu08g1011 Cmu-Chr8:22352225 Cmu05g0094 Cmu-Chr5:890085 3.90E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1011 - - - 0.0