Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1029 ATGGCGTTGCAGAATATTGGTGCCTCAAACCGTGATGATGCCTTCTATAGGTATAAGATGCCTAAGATGGTTACTAAAATTGAAGGTAGAGGTAATGGCATCAAGACTAATGTAGTTAACATGGTGGAAATTGCAAAAGCCTTGGGCAGACCTGCCTCTTACACTACCAAGTACTTTGGATGTGAGCTTGGTGCGCAATCCAAGTTCGATGAGAAAACCGGGACGTCTCTTGTAAATGGTGCTCATGAGACAGCAAAGCTGGCTGGTCTTCTTGAAAATTTCATAAAAAAATATGTTCAATGCTATGGATGTGGAAACCCTGAGACTGAGATAATCATCACAAAGACGCAGATGATCACTATGAAATGTGCTGCCTGTGGATTCATATCTGATGTTGACATGAGAGATAAACTCACAACGTTTATTCTCAAGAATCCTCCTGAACAGAAGAAGGGATCAAAAGACAAGAAAGCAATGAGGAGGGCTGAGAAGGAACGACTTAAGGAGGGAGAGGTTGCTGATGAGGAGCAGAAGAAAATAAAGAAGGATTCGCTAAAGAAGAAAAGCACTAGTACTACAAAGGATGCTGTAACCAAGGTTCCAAGCAAGAAAAAGAATAATGGTTCAGATGAGGATCATTCTCCAACTCGCAGTCATGCCGGTGATAATGACCAAGCAGATGATGACGATGATGACGATGATGTTCAGTGGCAAACAGACACTTCTCTAGAGGCAGCCAAACAGCGTATCCAGGAGCAGCTGAGTGCTGTCACTGCTGATATGGTCATGCTCTCTACTACCGAAGAGAATAAGTCGTCAAAGAAGTCCCCTGAGCACGAGAAGTCTGCAGTCAATGGAACCAAGAATGGAAATGGAGTTTCTACCCATGGTGCCCTCGTTCAAGAGATCAAAGATTATTTGAAGAAAGGTTCCTCTGCAGCCGATCTCAAATCATTCTTGGAATCACTTTCTGGAACTCGCCAAGAGATTGTGAATGCCTTAGTCGAGTCTCTGTTCGATGGTGTTGGGAAAGGCTTCTCAAAGGAGGTAGTGAAAAAGAAGAAGTTCCTAGCTGCAGCTGCCGCTCAGGAGGGATCACAGATAGTTCTTTTACGCGCCATTGAATCTTTCTGTCTGAACACAAGTCCAGAGGCGGGTAAGGAGGTCGCTCTAGTCCTGAAATCGTTATATGACGGTGATGTAATAGAGGAGGAATTCGTACTAGAGTGGTACCAGCAGGGTGTTGCTGGTGCTAACAAAAGCTCTCAAATCTGGAAGTATGTAAAGCCCTTCATCGAATGGCTCCAGAATGCTGAGTCGGAGACGGAAGAAGAATAA 1338 44.25 MALQNIGASNRDDAFYRYKMPKMVTKIEGRGNGIKTNVVNMVEIAKALGRPASYTTKYFGCELGAQSKFDEKTGTSLVNGAHETAKLAGLLENFIKKYVQCYGCGNPETEIIITKTQMITMKCAACGFISDVDMRDKLTTFILKNPPEQKKGSKDKKAMRRAEKERLKEGEVADEEQKKIKKDSLKKKSTSTTKDAVTKVPSKKKNNGSDEDHSPTRSHAGDNDQADDDDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTTEENKSSKKSPEHEKSAVNGTKNGNGVSTHGALVQEIKDYLKKGSSAADLKSFLESLSGTRQEIVNALVESLFDGVGKGFSKEVVKKKKFLAAAAAQEGSQIVLLRAIESFCLNTSPEAGKEVALVLKSLYDGDVIEEEFVLEWYQQGVAGANKSSQIWKYVKPFIEWLQNAESETEEE 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22583964 22585301 - CmPI595203_08g010290.1 Cmu08g1029 422515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1029 445 Gene3D - 293 436 - -
Cmu08g1029 445 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu08g1029 445 SMART 542_3 354 441 IPR003307 GO:0005515(InterPro)
Cmu08g1029 445 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Cmu08g1029 445 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu08g1029 445 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 445 IPR003307 GO:0005515(InterPro)
Cmu08g1029 445 SUPERFAMILY ARM repeat 298 439 IPR016024 -
Cmu08g1029 445 Gene3D - 105 145 - -
Cmu08g1029 445 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu08g1029 445 CDD W2_eIF5 294 443 - -
Cmu08g1029 445 ProSiteProfiles W2 domain profile. 274 445 IPR003307 GO:0005515(InterPro)
Cmu08g1029 445 MobiDBLite consensus disorder prediction 143 236 - -
Cmu08g1029 445 MobiDBLite consensus disorder prediction 267 294 - -
Cmu08g1029 445 MobiDBLite consensus disorder prediction 148 224 - -
Cmu08g1029 445 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743(InterPro)|GO:0006413(InterPro)
Cmu08g1029 445 Gene3D - 2 104 - -
Cmu08g1029 445 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 441 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005092(PANTHER)|GO:0005829(PANTHER)|GO:0006413(InterPro)|GO:0071074(PANTHER)
Cmu08g1029 445 FunFam Eukaryotic translation initiation factor 5 1 104 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1029 K03262 - csv:101210873 741.88