Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1036 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCGTCCAAACAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAACCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTCGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCATTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGACTGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCGGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCCTGGGAACAATCTACAGAAAGCTGTTTGTTGCAGAAATATCCATCGGAAATTGATTGGGCTTCGATTTTAACATCTTGA 1101 50.05 MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSSSSFPDFSFSSSVQTESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVTDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLLQKYPSEIDWASILTS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22680774 22681874 + CmPI595203_08g010360.1 Cmu08g1036 422522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1036 366 CDD AP2 163 223 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1036 366 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1036 366 PRINTS Ethylene responsive element binding protein signature 187 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1036 366 MobiDBLite consensus disorder prediction 271 289 - -
Cmu08g1036 366 Pfam AP2 domain 164 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1036 366 Gene3D AP2/ERF domain 164 222 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1036 366 FunFam Ethylene-responsive transcription factor 2 163 222 - -
Cmu08g1036 366 ProSiteProfiles AP2/ERF domain profile. 164 221 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1036 366 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 363 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cmu08g1036 366 SMART rav1_2 164 227 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1036 366 MobiDBLite consensus disorder prediction 257 348 - -
Cmu08g1036 366 SUPERFAMILY DNA-binding domain 164 222 IPR016177 GO:0003677(InterPro)
Cmu08g1036 366 MobiDBLite consensus disorder prediction 305 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0188 Cmu-Chr1:1869467 Cmu08g1036 Cmu-Chr8:22680774 2.30E-28 dispersed
Cmu02g0114 Cmu-Chr2:1273809 Cmu08g1036 Cmu-Chr8:22680774 1.20E-27 dispersed
Cmu06g0784 Cmu-Chr6:9616416 Cmu08g1036 Cmu-Chr8:22680774 1.90E-28 dispersed
Cmu07g1480 Cmu-Chr7:29933088 Cmu08g1036 Cmu-Chr8:22680774 2.50E-33 dispersed
Cmu08g1036 Cmu-Chr8:22680774 Cmu11g1539 Cmu-Chr11:27710984 4.70E-92 dispersed
Cmu01g1833 Cmu-Chr1:31976975 Cmu08g1036 Cmu-Chr8:22680774 1.20E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6679 PF00847 AP2 4.90E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1036 K09286 - csv:101222833 576.244