Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1062 ATGGCTGCCGCCCCTTCTGTTCGCGAGGAGAATGTTTACATGGCCAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCCCTCGACAAGGAGGAGCTCACCGTCGAGGAGAGAAACCTCCTTTCTGTCGCCTACAAGAACGTCATCGGCGCTCGCAGGGCTTCCTGGCGTATCATTTCCTCCATCGAACAAAAGGAGGAGAGCCGAGGCAACGACGACCATGTCTCTGTGATCCGTGACTATAGATCCAAAATTGAGACCGAACTCTCCAATATTTGCGATGGAATCCTCAAGCTTCTCGATTCCAGACTCATTCCCTCCGCCGCTTCCGGAGATTCCAAGGTTTTTTACCTCAAAATGAAGGGAGATTACCATAGATACCTCGCCGAATTCAAAACCGGAGCCGAACGCAAGGAAGCTGCTGAAAGCACTCTCACTGCTTACAAAGCCGCTCAGGATATTGCAAATGCTGAGTTGCCTCCTACACATCCGATCCGACTTGGATTGGCCCTTAACTTCTCTGTATTCTACTATGAAATTTTGAATTCACCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCTATCGCTGAATTGGATACCCTTGGCGAGGAATCCTACAAAGATAGTACTTTGATCATGCAGCTTCTTCGCGATAATCTCACTCTCTGGACATCGGACATGCAGGATGATGGTGCTGATGAGATTAAAGAAGCTCCCCCCAAGCGTGAGGATGAAAAGCAGTGA 786 50.0 MAAAPSVREENVYMAKLAEQAERYEEMVEFMEKVSASLDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRDYRSKIETELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAPPKREDEKQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22922714 22924359 + CmPI595203_08g010620.1 Cmu08g1062 422548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1062 261 FunFam 14-3-3 protein epsilon 4 251 - -
Cmu08g1062 261 Gene3D - 2 251 IPR036815 -
Cmu08g1062 261 MobiDBLite consensus disorder prediction 243 261 - -
Cmu08g1062 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Cmu08g1062 261 Coils Coil 14 41 - -
Cmu08g1062 261 SMART 1433_4 8 251 IPR023410 -
Cmu08g1062 261 PANTHER 14-3-3 PROTEIN 8 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cmu08g1062 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cmu08g1062 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cmu08g1062 261 MobiDBLite consensus disorder prediction 242 261 - -
Cmu08g1062 261 PIRSF 14-3-3 2 250 IPR000308 -
Cmu08g1062 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Cmu08g1062 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cmu08g1062 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cmu08g1062 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cmu08g1062 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cmu08g1062 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cmu08g1062 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1050 Cmu-Chr8:22805203 Cmu08g1062 Cmu-Chr8:22922714 4.60E-91 dispersed
Cmu08g1062 Cmu-Chr8:22922714 Cmu11g1449 Cmu-Chr11:26706418 7.90E-102 dispersed
Cmu07g1598 Cmu-Chr7:31142492 Cmu08g1062 Cmu-Chr8:22922714 1.40E-119 transposed
Cmu11g1426 Cmu-Chr11:26491755 Cmu08g1062 Cmu-Chr8:22922714 4.00E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1062 K06630 - csv:101220164 508.834