Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1073 ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAATTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATCAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCACCACCACAACCAACTACCGGAAGAAGAAAACGACGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCTGTGGAACGTAATCGCCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACCCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACCCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAATTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAACACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA 936 45.09 MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKFTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23002440 23003785 - CmPI595203_08g010730.1 Cmu08g1073 422559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1073 311 MobiDBLite consensus disorder prediction 75 96 - -
Cmu08g1073 311 Gene3D - 110 180 IPR036638 GO:0046983(InterPro)
Cmu08g1073 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 184 IPR036638 GO:0046983(InterPro)
Cmu08g1073 311 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Cmu08g1073 311 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Cmu08g1073 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Cmu08g1073 311 MobiDBLite consensus disorder prediction 63 113 - -
Cmu08g1073 311 PANTHER MAX DIMERIZATION, MAD 4 301 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1073 Cmu-Chr8:23002440 Cmu02g0423 Cmu-Chr2:3851255 8.70E-07 dispersed
Cmu02g1582 Cmu-Chr2:29658195 Cmu08g1073 Cmu-Chr8:23002440 8.20E-61 transposed
Cmu03g2268 Cmu-Chr3:31353262 Cmu08g1073 Cmu-Chr8:23002440 2.70E-46 transposed
Cmu05g0002 Cmu-Chr5:72533 Cmu08g1073 Cmu-Chr8:23002440 9.20E-40 transposed
Cmu05g0361 Cmu-Chr5:3070903 Cmu08g1073 Cmu-Chr8:23002440 4.00E-38 transposed
Cmu05g0597 Cmu-Chr5:5059936 Cmu08g1073 Cmu-Chr8:23002440 7.20E-22 transposed
Cmu05g0979 Cmu-Chr5:8952869 Cmu08g1073 Cmu-Chr8:23002440 4.10E-19 transposed
Cmu09g1128 Cmu-Chr9:11802742 Cmu08g1073 Cmu-Chr8:23002440 3.80E-47 transposed
Cmu01g1750 Cmu-Chr1:31220515 Cmu08g1073 Cmu-Chr8:23002440 1.40E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6681 PF00010 HLH 4.30E-10 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1073 - - - 0.0