Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g1073 | ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAATTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATCAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCACCACCACAACCAACTACCGGAAGAAGAAAACGACGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCTGTGGAACGTAATCGCCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACCCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACCCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCCAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAATTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAACACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA | 936 | 45.09 | MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKFTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS | 311 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23002440 | 23003785 | - | CmPI595203_08g010730.1 | Cmu08g1073 | 422559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g1073 | 311 | MobiDBLite | consensus disorder prediction | 75 | 96 | - | - | |
Cmu08g1073 | 311 | Gene3D | - | 110 | 180 | IPR036638 | GO:0046983(InterPro) | |
Cmu08g1073 | 311 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 184 | IPR036638 | GO:0046983(InterPro) | |
Cmu08g1073 | 311 | SMART | finulus | 122 | 173 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g1073 | 311 | Pfam | Helix-loop-helix DNA-binding domain | 117 | 168 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g1073 | 311 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 167 | IPR011598 | GO:0046983(InterPro) | |
Cmu08g1073 | 311 | MobiDBLite | consensus disorder prediction | 63 | 113 | - | - | |
Cmu08g1073 | 311 | PANTHER | MAX DIMERIZATION, MAD | 4 | 301 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1073 | Cmu-Chr8:23002440 | Cmu02g0423 | Cmu-Chr2:3851255 | 8.70E-07 | dispersed | |
Cmu02g1582 | Cmu-Chr2:29658195 | Cmu08g1073 | Cmu-Chr8:23002440 | 8.20E-61 | transposed | |
Cmu03g2268 | Cmu-Chr3:31353262 | Cmu08g1073 | Cmu-Chr8:23002440 | 2.70E-46 | transposed | |
Cmu05g0002 | Cmu-Chr5:72533 | Cmu08g1073 | Cmu-Chr8:23002440 | 9.20E-40 | transposed | |
Cmu05g0361 | Cmu-Chr5:3070903 | Cmu08g1073 | Cmu-Chr8:23002440 | 4.00E-38 | transposed | |
Cmu05g0597 | Cmu-Chr5:5059936 | Cmu08g1073 | Cmu-Chr8:23002440 | 7.20E-22 | transposed | |
Cmu05g0979 | Cmu-Chr5:8952869 | Cmu08g1073 | Cmu-Chr8:23002440 | 4.10E-19 | transposed | |
Cmu09g1128 | Cmu-Chr9:11802742 | Cmu08g1073 | Cmu-Chr8:23002440 | 3.80E-47 | transposed | |
Cmu01g1750 | Cmu-Chr1:31220515 | Cmu08g1073 | Cmu-Chr8:23002440 | 1.40E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6681 | PF00010 | HLH | 4.30E-10 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g1073 | - | - | - | 0.0 |