Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1086 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCTCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTAGTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGCGGTGGCGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATATTTTGGGGAAGAAACCCTAA 741 50.74 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSSRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYVYLRGAPVQQKALALPAAAASGREEDDASNPSSSGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHILGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23127870 23128610 - CmPI595203_08g010860.1 Cmu08g1086 422572

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1086 246 Gene3D - 167 243 - -
Cmu08g1086 246 MobiDBLite consensus disorder prediction 1 54 - -
Cmu08g1086 246 MobiDBLite consensus disorder prediction 20 53 - -
Cmu08g1086 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu08g1086 246 NCBIfam homeobox domain, ZF-HD class 183 239 IPR006455 -
Cmu08g1086 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cmu08g1086 246 FunFam Zinc-finger homeodomain protein 2 176 244 - -
Cmu08g1086 246 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cmu08g1086 246 MobiDBLite consensus disorder prediction 149 180 - -
Cmu08g1086 246 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cmu08g1086 246 SUPERFAMILY Homeodomain-like 169 243 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1086 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1894 Cmu-Chr1:32443308 Cmu08g1086 Cmu-Chr8:23127870 7.60E-41 dispersed
Cmu08g1086 Cmu-Chr8:23127870 Cmu11g0008 Cmu-Chr11:481676 7.60E-46 dispersed
Cmu01g1793 Cmu-Chr1:31618341 Cmu08g1086 Cmu-Chr8:23127870 1.50E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1086 . 55 246 ZF-HD Transcription Factor Family AT5G65410 50.7 1.2e-44 177.2
Cmu08g1086 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 2.4e-49 192.6
Cmu01g1793 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Cmu10g1661 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 4.1e-41 165.2
Cmu11g0008 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Cmu11g0008 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.2 5.1e-55 211.8
Cmu01g1894 . 128 334 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cmu10g2256 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.9e-51 198.7
Cmu09g1750 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.1e-51 198.4
Cmu10g2256 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cmu09g1750 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.9e-58 222.6
Cmu09g1750 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cmu10g2256 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cmu05g2486 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 8.0e-48 187.6
Cmu09g1750 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cmu11g0008 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.5e-51 200.3
Cmu08g1086 . 55 242 ZF-HD Transcription Factor Family AT4G24660 55.0 2.4e-49 192.6
Cmu01g1793 . 35 229 ZF-HD Transcription Factor Family AT4G24660 50.3 2.9e-47 185.7
Cmu10g1661 . 46 187 ZF-HD Transcription Factor Family AT4G24660 51.2 4.1e-41 165.2
Cmu09g1750 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.8e-51 199.5
Cmu10g2256 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.2e-48 189.9
Cmu01g1894 . 128 334 ZF-HD Transcription Factor Family AT2G18350 52.9 3.2e-50 195.7
Cmu08g1086 . 55 246 ZF-HD Transcription Factor Family AT5G65410 50.7 1.2e-44 177.2
Cmu05g2486 . 1 192 ZF-HD Transcription Factor Family AT1G69600 50.5 8.0e-48 187.6
Cmu09g1750 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cmu10g2256 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 3.9e-51 198.7
Cmu09g1750 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.1e-51 198.4
Cmu11g0008 . 80 292 ZF-HD Transcription Factor Family AT1G14440 54.2 5.1e-55 211.8
Cmu10g2256 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cmu09g1750 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 2.9e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6682 PF04770 ZF-HD_dimer 4.90E-30 No_clan Cmu TF