Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1086 ATGGAATTCGACGAAGAGAACGACGAAGAAATAATGGAAGAGATGCCAATCTCCACTCACCACTATGACTCTCTCAGTAACTCAGCTTCAACTCGGCCCAAACCCGGAGAAGGTTCATCGGCGGTGAGAAAAAGCAGCAGCGGCGGTGGAGGGAGTAGTAGTAGATATAGAGAGTGTTTGAAGAATCACGCTATCGGAATCGGCGGACACGCGGTGGACGGTTGCGGCGAGTTTATGCCGGCGGGAGAAGAAGGAAGTATAGATGCACTAAAATGCGCCGCCTGTAACTGTCACCGGAATTTTCACCGGAAAGAAACGGATTCAGATCAAGGACATTACTATTACCATCAACAACAACAAATTTGTTCATATCGTGGGCCCACACCACACCCATCTGCTTACGTGTACTTAAGGGGGGCCCCAGTTCAACAGAAGGCGTTGGCGTTGCCGGCGGCGGCGGCGTCGGGGAGGGAGGAGGATGATGCGTCAAATCCGAGTAGTAGCGGCGGCGGTGGCGGTGGCGGAGGAAGTGGAAGTGGGTTGTTGAAGAAGAGATTTAGGACAAAGTTTAGTGCAGAGCAAAAGGAGAAAATGTTAGGGTTTGCGGAGAAAGTTGGATGGACAATTCAGAAACACGATGAGGCTGACGTGGAACGATTCTGTACGGAAACCGGAGTCCGGCGGCAAGTACTTAAGGTGTGGATGCATAACAATAAGCATATTTTGGGGAAGAAACCCTAA 741 50.74 MEFDEENDEEIMEEMPISTHHYDSLSNSASTRPKPGEGSSAVRKSSSGGGGSSSRYRECLKNHAIGIGGHAVDGCGEFMPAGEEGSIDALKCAACNCHRNFHRKETDSDQGHYYYHQQQQICSYRGPTPHPSAYVYLRGAPVQQKALALPAAAASGREEDDASNPSSSGGGGGGGGSGSGLLKKRFRTKFSAEQKEKMLGFAEKVGWTIQKHDEADVERFCTETGVRRQVLKVWMHNNKHILGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23127870 23128610 - CmPI595203_08g010860.1 Cmu08g1086 422572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1086 246 Gene3D - 167 243 - -
Cmu08g1086 246 MobiDBLite consensus disorder prediction 1 54 - -
Cmu08g1086 246 MobiDBLite consensus disorder prediction 20 53 - -
Cmu08g1086 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 240 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cmu08g1086 246 NCBIfam homeobox domain, ZF-HD class 183 239 IPR006455 -
Cmu08g1086 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Cmu08g1086 246 FunFam Zinc-finger homeodomain protein 2 176 244 - -
Cmu08g1086 246 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Cmu08g1086 246 MobiDBLite consensus disorder prediction 149 180 - -
Cmu08g1086 246 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Cmu08g1086 246 SUPERFAMILY Homeodomain-like 169 243 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1894 Cmu-Chr1:32443308 Cmu08g1086 Cmu-Chr8:23127870 7.60E-41 dispersed
Cmu08g1086 Cmu-Chr8:23127870 Cmu11g0008 Cmu-Chr11:481676 7.60E-46 dispersed
Cmu01g1793 Cmu-Chr1:31618341 Cmu08g1086 Cmu-Chr8:23127870 1.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6682 PF04770 ZF-HD_dimer 4.90E-30 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1086 - - - 0.0