Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1090 ATGATGGGCCCACCTCCCCAGACAGCAGCTCCTTCTGCTTCTGCCATAGTACACGTGTCAGCATGGGACGAAAAAGACAGCATCCCAGTACGTTTGGCTACTCTTCGGCGGCTTCTGGGCTCTGTTTTTCGCTTTGATTGGGAGATTGGAACAGAGAGAGGGGAAGAGAAAAAGGGGAAAGGGATTTTTTTAGCAATGGCTCCTAGTTTTGACCTTGCTGTTTCTAACCTTTTATGTGCTGAAGAGAATTGCATTTTTGATAATAACGACGACGATGATGAAACAGTAGTTGAGGAGTTCTTGATGGCTCCTTATTATCTTAGAACTCGTCCGAATCGGAACCCCCACCGTGGCGGCGGTGGCGACAGTGATGATGGGTTGCCGTTTATGAGCGATGAATGTTTGATTGAAATGGTTGAGAAGGAAACCCATCACTTGCCTGTTGATGGGTATCTCGTGAAGTTGCAGAACGGCGACTTGGATGTTGGAGCAAGAAAAGAGGCCGTCGATTGGATTCAAAAGGTGAGTGCTCATTTCAGTTTTGGACCTCTCTGTACATACTTGGCTGTAAACTACTTGGATCGTTTCCTCTCTGCTTACGATCTACCCAAAGGTAAAGCTTGGACAATGCAGTTGCTTGCTGTGGCATGTATGTCCCTTGCAGCCAAAATGGAGGAGGCTGAAGTCCCACTCTCTTTGGATTTACAGGTGGGTGGATCAAAATTTGTGTTTGAAGCAAGAACCATTGAAAGAATGGAGCTTTTAGTCTTGACAACATTGGGGTGGAGAATGCAAGCAGTTACACCTTTCTCTTTTATCGATCATTACCTCCGCAAGATTAACGATGACGAACTCTCTATCAAAATGTCGATCACCCGATCGATTCATCTACTCTTGAACATAATACAAGGGATTGACTTCTTGGAATTCAAACCTTCTGAAATTGCTGCAGCTGTGGCAATATCAGTAGCTGGGCAAGCTCAATCAGTGGACCCTGAGAGAGCAATTCCTCTTCTCATTCAGCAACTCCAAATGGAAAGAGTTCTGAAGTGTCTTAATTTAATCAATGACATGTTCTTAACCTGTGGGGGTGGGATGGTGAAGGACTCGAGAGTGTCGACGTCGGAGCCCCGGAGCCCGAGCGGGGTGTTGGACGTGACGTGTTTAAGTTATAAAAGCAATGATACAGCAGTTGGGTCATGTGCAAACTCTTCTCATCATACCAGCTCAGAGGCTACAAAGAGGAGGAGACTGAACAGACCCTGTGAAGTGGAGCTATAG 1281 46.14 MMGPPPQTAAPSASAIVHVSAWDEKDSIPVRLATLRRLLGSVFRFDWEIGTERGEEKKGKGIFLAMAPSFDLAVSNLLCAEENCIFDNNDDDDETVVEEFLMAPYYLRTRPNRNPHRGGGGDSDDGLPFMSDECLIEMVEKETHHLPVDGYLVKLQNGDLDVGARKEAVDWIQKVSAHFSFGPLCTYLAVNYLDRFLSAYDLPKGKAWTMQLLAVACMSLAAKMEEAEVPLSLDLQVGGSKFVFEARTIERMELLVLTTLGWRMQAVTPFSFIDHYLRKINDDELSIKMSITRSIHLLLNIIQGIDFLEFKPSEIAAAVAISVAGQAQSVDPERAIPLLIQQLQMERVLKCLNLINDMFLTCGGGMVKDSRVSTSEPRSPSGVLDVTCLSYKSNDTAVGSCANSSHHTSSEATKRRRLNRPCEVEL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23201762 23205663 - CmPI595203_08g010900.1 Cmu08g1090 422576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1090 426 SMART Cyclin_C_2 267 392 IPR004367 -
Cmu08g1090 426 SMART cyclin_7 170 258 IPR013763 -
Cmu08g1090 426 CDD CYCLIN_AtCycD-like_rpt1 164 262 - -
Cmu08g1090 426 Pfam Cyclin, C-terminal domain 267 359 IPR004367 -
Cmu08g1090 426 PANTHER CYCLINS 136 334 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu08g1090 426 Gene3D - 148 265 - -
Cmu08g1090 426 FunFam D2/4-type cyclin 148 263 - -
Cmu08g1090 426 SUPERFAMILY Cyclin-like 250 360 IPR036915 -
Cmu08g1090 426 Gene3D - 137 346 - -
Cmu08g1090 426 FunFam D6-type cyclin 264 353 - -
Cmu08g1090 426 Pfam Cyclin, N-terminal domain 137 264 IPR006671 -
Cmu08g1090 426 CDD CYCLIN_AtCycD-like_rpt2 267 355 - -
Cmu08g1090 426 SUPERFAMILY Cyclin-like 129 264 IPR036915 -
Cmu08g1090 426 MobiDBLite consensus disorder prediction 400 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1147 Cmu-Chr2:23788362 Cmu08g1090 Cmu-Chr8:23201762 3.30E-30 dispersed
Cmu05g2087 Cmu-Chr5:30474705 Cmu08g1090 Cmu-Chr8:23201762 2.50E-34 dispersed
Cmu08g1090 Cmu-Chr8:23201762 Cmu10g1798 Cmu-Chr10:22379054 7.40E-49 dispersed
Cmu05g2557 Cmu-Chr5:34338005 Cmu08g1090 Cmu-Chr8:23201762 1.10E-45 transposed
Cmu09g1973 Cmu-Chr9:35818802 Cmu08g1090 Cmu-Chr8:23201762 8.40E-48 transposed
Cmu01g1791 Cmu-Chr1:31602378 Cmu08g1090 Cmu-Chr8:23201762 1.70E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1090 K18810 - csv:101216206 629.787