Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1092 ATGCCGCCACTGGGTGTGCAGCTCTCTGTAACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGATTGGAATTCGATACAATGGAGTCGACAATGTGCTCGAAGTTCTCAACGACGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAACTCATCAGCGACCACAACTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTCAGGTTATAATTGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTATTCTTACGCTATTTACCAACACTGGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGATCGCTCTCCGCCAAGAGGCCGAGCCCTGGCATATCCGGAGGCTGTCCTGCTCGTTGACCCCATTGAGCCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCTGCCTACATGGGTGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCACCCCAAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCCCATTACGCGGGAGAGGACCTGGTGCCGAAAATCGGAGCCGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCACCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGTAGACTATTTGTCAAAGATAGCTACGTTAGTGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTACACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAACTTTTTCATCGACGGCGTACGGCCCGGCGACTACAATCTGTATGCATGGGTTCCCGGCTTTATTGGAGATTATCGTTACGACGCTCTCATCAACATTACAGAAGGCAGCGAGATAGACATGGATGACATAACATACGAGCCTCCGAGACAAGGGCCTACGCTATGGGAAATAGGCATCCCAGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACCACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAGTACGGACTATGGGAAAGATACAGTGAATTGTATTCCGACGCAGACTTGGTTTATACTGTTGGTGTCAGTGACTACACTAAGGATTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATATAAGGGAACAACATGGCAAGTAAAGTTCAAGTTAGACAACGTCGACAACGAAGCAACATACAAGCTTTGGGTCGCATTGGCCTCCGCTTCACTTGCAGAATTACAGGTTGGAGTTAATGAGGCTAAAGCAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCAATCGCGCGACACGGCATTCATGGCCTGCATTGGGTTTACAACGTGGACATTCCGGGCAATCGGCTGGTTACCGGCGACAACACCATCTTCTTCACGCAGCCTAGAAGCACAGGTCCTTTTCAAGCGATTATGTATGATTATATTCGTCTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCCTTGGAATAA 1926 48.65 MPPLGVQLSVTERQVTMDNGIVQVTLSNPDGIVIGIRYNGVDNVLEVLNDESNRGYWDLVWNSSATTTGLFDVIKSTGFQVIIENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHWKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSCLHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSTDALQLWEDAKAQATIEVQSWPYSFPASDDFPKSNQRGNISGRLFVKDSYVSEDLIPADGAFVGLATPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSEIDMDDITYEPPRQGPTLWEIGIPDRSAAEFYVPDPNPNHVNKLYLNHPDKFRQYGLWERYSELYSDADLVYTVGVSDYTKDWFFAQVTRKTENGTYKGTTWQVKFKLDNVDNEATYKLWVALASASLAELQVGVNEAKAKPVFSSGLIGRDNSIARHGIHGLHWVYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPSSAHPLE 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23227398 23233688 + CmPI595203_08g010920.1 Cmu08g1092 422578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1092 641 CDD RGL4_N 8 293 - -
Cmu08g1092 641 Gene3D - 5 301 IPR014718 GO:0030246(InterPro)
Cmu08g1092 641 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Cmu08g1092 641 SUPERFAMILY Galactose-binding domain-like 439 629 IPR008979 -
Cmu08g1092 641 SUPERFAMILY Starch-binding domain-like 330 430 IPR013784 GO:0030246(InterPro)
Cmu08g1092 641 FunFam Rhamnogalacturonate lyase B 329 428 - -
Cmu08g1092 641 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 4 632 IPR051850 -
Cmu08g1092 641 Gene3D - 329 429 - -
Cmu08g1092 641 Gene3D - 439 629 - -
Cmu08g1092 641 Pfam Polysaccharide lyase family 4, domain III 441 628 IPR029411 -
Cmu08g1092 641 SUPERFAMILY Galactose mutarotase-like 11 292 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cmu08g1092 641 CDD RGL4_M 332 431 IPR029413 -
Cmu08g1092 641 CDD RGL4_C 443 629 - -
Cmu08g1092 641 Pfam Rhamnogalacturonate lyase family 6 201 IPR010325 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1092 Cmu-Chr8:23227398 Cmu11g1472 Cmu-Chr11:27020344 6.10E-281 dispersed
Cmu01g2133 Cmu-Chr1:34049365 Cmu08g1092 Cmu-Chr8:23227398 1.90E-203 transposed
Cmu01g1769 Cmu-Chr1:31414268 Cmu08g1092 Cmu-Chr8:23227398 5.30E-214 wgd
Cmu11g1471 Cmu-Chr11:27000616 Cmu08g1092 Cmu-Chr8:23227398 3.40E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1092 K18195 - csv:101215720 1244.95