Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g1092 | ATGCCGCCACTGGGTGTGCAGCTCTCTGTAACAGAACGTCAGGTGACGATGGATAATGGCATAGTCCAAGTCACGTTATCAAACCCAGATGGCATAGTGATTGGAATTCGATACAATGGAGTCGACAATGTGCTCGAAGTTCTCAACGACGAATCTAACCGAGGGTACTGGGACCTCGTGTGGAACTCATCAGCGACCACAACTGGATTGTTTGATGTGATAAAGTCTACAGGTTTTCAGGTTATAATTGAAAATGAAGACCAAGTGGAGCTCTCCTTTACCAGAACATGGGATCTGTCTCTCGAGGGAAAGCTTGTGCCTTTAGAGATTGATAAAAGGTTTATAATGCTCCGGGGTTCGTCTGGGTTCTATTCTTACGCTATTTACCAACACTGGAAAGAATGGCCTGGTTTCAACCTTGGTGAAACCAGACTCGCCTTCAAACTCAGAAAAGACAAGTTTCACTATATGGCCATGGCAGACAACAGACAGAGATACATGCCGCTTCCAGATGATCGCTCTCCGCCAAGAGGCCGAGCCCTGGCATATCCGGAGGCTGTCCTGCTCGTTGACCCCATTGAGCCTGAGCTCCAGGGAGAGGTGGATGACAAGTATCAGTACTCATGCGACAACAAAGATAGCTGCCTACATGGGTGGATATCCACCGATCCGGCAGTCGGATTCTGGCTAATCACCCCAAGCAATGAGTTCCGATCCGGTGGACCCGTTAAACAGAACCTTACTTCACACGTCGGCCCAACCACCCTAGCTGTTTTTATAAGCGCCCATTACGCGGGAGAGGACCTGGTGCCGAAAATCGGAGCCGGTGAGGAGTGGAAGAAAGTTTTCGGCCCTGTGTTCATCTATCTCAACTCCACTTACGATTCCACCGACGCACTTCAGCTCTGGGAAGATGCCAAAGCACAGGCGACGATCGAAGTCCAAAGTTGGCCCTACAGCTTCCCTGCTTCGGATGATTTTCCAAAGTCAAACCAACGGGGTAATATCAGTGGTAGACTATTTGTCAAAGATAGCTACGTTAGTGAAGACTTGATACCAGCAGACGGTGCGTTTGTTGGCCTGGCTACACCAGGAGACGTAGGATCATGGCAACGAGAGAGCAAGGGTTACCAATTTTGGAGTAGAGCAGATGAAAGTGGAAACTTTTTCATCGACGGCGTACGGCCCGGCGACTACAATCTGTATGCATGGGTTCCCGGCTTTATTGGAGATTATCGTTACGACGCTCTCATCAACATTACAGAAGGCAGCGAGATAGACATGGATGACATAACATACGAGCCTCCGAGACAAGGGCCTACGCTATGGGAAATAGGCATCCCAGATCGCTCAGCAGCAGAGTTCTATGTTCCAGATCCAAATCCCAACCACGTCAATAAGCTCTATCTTAACCATCCTGATAAGTTTCGACAGTACGGACTATGGGAAAGATACAGTGAATTGTATTCCGACGCAGACTTGGTTTATACTGTTGGTGTCAGTGACTACACTAAGGATTGGTTCTTCGCTCAGGTTACCAGGAAGACAGAAAACGGAACATATAAGGGAACAACATGGCAAGTAAAGTTCAAGTTAGACAACGTCGACAACGAAGCAACATACAAGCTTTGGGTCGCATTGGCCTCCGCTTCACTTGCAGAATTACAGGTTGGAGTTAATGAGGCTAAAGCAAAGCCAGTGTTCTCGAGTGGACTGATCGGAAGGGACAATTCAATCGCGCGACACGGCATTCATGGCCTGCATTGGGTTTACAACGTGGACATTCCGGGCAATCGGCTGGTTACCGGCGACAACACCATCTTCTTCACGCAGCCTAGAAGCACAGGTCCTTTTCAAGCGATTATGTATGATTATATTCGTCTGGAAGCTCCTCCACCTCCTTCCTCCGCCCATCCCTTGGAATAA | 1926 | 48.65 | MPPLGVQLSVTERQVTMDNGIVQVTLSNPDGIVIGIRYNGVDNVLEVLNDESNRGYWDLVWNSSATTTGLFDVIKSTGFQVIIENEDQVELSFTRTWDLSLEGKLVPLEIDKRFIMLRGSSGFYSYAIYQHWKEWPGFNLGETRLAFKLRKDKFHYMAMADNRQRYMPLPDDRSPPRGRALAYPEAVLLVDPIEPELQGEVDDKYQYSCDNKDSCLHGWISTDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFISAHYAGEDLVPKIGAGEEWKKVFGPVFIYLNSTYDSTDALQLWEDAKAQATIEVQSWPYSFPASDDFPKSNQRGNISGRLFVKDSYVSEDLIPADGAFVGLATPGDVGSWQRESKGYQFWSRADESGNFFIDGVRPGDYNLYAWVPGFIGDYRYDALINITEGSEIDMDDITYEPPRQGPTLWEIGIPDRSAAEFYVPDPNPNHVNKLYLNHPDKFRQYGLWERYSELYSDADLVYTVGVSDYTKDWFFAQVTRKTENGTYKGTTWQVKFKLDNVDNEATYKLWVALASASLAELQVGVNEAKAKPVFSSGLIGRDNSIARHGIHGLHWVYNVDIPGNRLVTGDNTIFFTQPRSTGPFQAIMYDYIRLEAPPPPSSAHPLE | 641 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23227398 | 23233688 | + | CmPI595203_08g010920.1 | Cmu08g1092 | 422578 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g1092 | 641 | CDD | RGL4_N | 8 | 293 | - | - | |
Cmu08g1092 | 641 | Gene3D | - | 5 | 301 | IPR014718 | GO:0030246(InterPro) | |
Cmu08g1092 | 641 | Pfam | Polysaccharide lyase family 4, domain II | 355 | 427 | IPR029413 | - | |
Cmu08g1092 | 641 | SUPERFAMILY | Galactose-binding domain-like | 439 | 629 | IPR008979 | - | |
Cmu08g1092 | 641 | SUPERFAMILY | Starch-binding domain-like | 330 | 430 | IPR013784 | GO:0030246(InterPro) | |
Cmu08g1092 | 641 | FunFam | Rhamnogalacturonate lyase B | 329 | 428 | - | - | |
Cmu08g1092 | 641 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 4 | 632 | IPR051850 | - | |
Cmu08g1092 | 641 | Gene3D | - | 329 | 429 | - | - | |
Cmu08g1092 | 641 | Gene3D | - | 439 | 629 | - | - | |
Cmu08g1092 | 641 | Pfam | Polysaccharide lyase family 4, domain III | 441 | 628 | IPR029411 | - | |
Cmu08g1092 | 641 | SUPERFAMILY | Galactose mutarotase-like | 11 | 292 | IPR011013 | GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro) | |
Cmu08g1092 | 641 | CDD | RGL4_M | 332 | 431 | IPR029413 | - | |
Cmu08g1092 | 641 | CDD | RGL4_C | 443 | 629 | - | - | |
Cmu08g1092 | 641 | Pfam | Rhamnogalacturonate lyase family | 6 | 201 | IPR010325 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1092 | Cmu-Chr8:23227398 | Cmu11g1472 | Cmu-Chr11:27020344 | 6.10E-281 | dispersed | |
Cmu01g2133 | Cmu-Chr1:34049365 | Cmu08g1092 | Cmu-Chr8:23227398 | 1.90E-203 | transposed | |
Cmu01g1769 | Cmu-Chr1:31414268 | Cmu08g1092 | Cmu-Chr8:23227398 | 5.30E-214 | wgd | |
Cmu11g1471 | Cmu-Chr11:27000616 | Cmu08g1092 | Cmu-Chr8:23227398 | 3.40E-249 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g1092 | K18195 | - | csv:101215720 | 1244.95 |