Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1097 ATGAGGAGAAATCTTGAGAGGAAGCCCAAGGTAAAGCGAAGTCATAAAGATTTACTTTACAAGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGCATGAAGTTCTGTTGTCAGACGCTTTATCCACAGAGCTTTATGCTGTGGCAATTAGCTATTTGTTCATGATCCATGATTACAAAGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1395 47.1 MRRNLERKPKVKRSHKDLLYKGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKKAIMAVSGFIQSGPRFVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKHEVLLSDALSTELYAVAISYLFMIHDYKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23310571 23327079 - CmPI595203_08g010970.1 Cmu08g1097 422583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1097 464 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 311 360 - -
Cmu08g1097 464 MobiDBLite consensus disorder prediction 104 125 - -
Cmu08g1097 464 ProSiteProfiles Tify domain profile. 149 184 IPR010399 -
Cmu08g1097 464 ProSiteProfiles GATA-type zinc finger domain profile. 310 358 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 MobiDBLite consensus disorder prediction 11 33 - -
Cmu08g1097 464 SMART GATA_3 310 363 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 Pfam GATA zinc finger 316 352 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 CDD ZnF_GATA 315 359 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 MobiDBLite consensus disorder prediction 1 49 - -
Cmu08g1097 464 ProSitePatterns GATA-type zinc finger domain. 316 343 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 Gene3D - 308 366 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu08g1097 464 ProSiteProfiles CCT domain profile. 245 287 IPR010402 GO:0005515(InterPro)
Cmu08g1097 464 Pfam CCT motif 245 286 IPR010402 GO:0005515(InterPro)
Cmu08g1097 464 PANTHER GATA TRANSCRIPTION FACTOR 28 102 402 IPR045280 GO:0006355(InterPro)
Cmu08g1097 464 MobiDBLite consensus disorder prediction 386 464 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1097 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1097 Cmu-Chr8:23310571 Cmu09g0157 Cmu-Chr9:1719868 3.30E-50 dispersed
Cmu08g1097 Cmu-Chr8:23310571 Cmu08g1098 Cmu-Chr8:23328077 6.90E-40 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g0157 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cmu08g1098 . 204 397 Tify Gene Family AT4G24470 61.8 1.6e-59 226.9
Cmu09g1583 . 89 267 Tify Gene Family AT4G24470 59.7 3.6e-48 189.1
Cmu09g0157 . 1 288 Tify Gene Family AT1G51600 59.1 1.1e-86 317.0
Cmu09g1583 . 86 303 Tify Gene Family AT1G51600 54.4 6.7e-52 201.4
Cmu08g1097 . 155 358 Tify Gene Family AT1G51600 51.2 2.5e-46 183.0
Cmu08g1098 . 198 397 Tify Gene Family AT1G51600 52.3 8.7e-44 174.5
Cmu08g1098 . 204 397 Tify Gene Family AT4G24470 61.8 1.6e-59 226.9
Cmu09g1583 . 89 267 Tify Gene Family AT4G24470 59.7 3.6e-48 189.1
Cmu09g0157 . 1 288 Tify Gene Family AT1G51600 59.1 1.1e-86 317.0
Cmu09g1583 . 86 303 Tify Gene Family AT1G51600 54.4 6.7e-52 201.4
Cmu08g1097 . 155 358 Tify Gene Family AT1G51600 51.2 2.5e-46 183.0
Cmu08g1098 . 198 397 Tify Gene Family AT1G51600 52.3 8.7e-44 174.5
Cmu09g0157 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cmu06g0631 . 1 180 Tify Gene Family AT4G14713 53.1 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003566 2 4 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 4 6 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6683 PF06203 CCT 1.90E-13 CL0281 Cmu TF