Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1097 ATGAGGAGAAATCTTGAGAGGAAGCCCAAGGTAAAGCGAAGTCATAAAGATTTACTTTACAAGGGAACTTTAAGGGATCTTTCAAAGAGAAGTCAAGACCATCCGGTGACCCCAGCCGAGCAGTGTGAAAGTGATGGTGGCAAGGACTTAGACTGCAGACATGATAAAAAAAAGGCCATTATGGCTGTTTCTGGCTTCATTCAATCAGGCCCTCGTTTTGTTAGGGCTTTCGAAAAGTTGATGGCGGCTGCAAATCCTCAGCCTTTGCAAGCGCGTCCCTTCCAGGAACATGTCCAAGTTTCCACAATGATGGGGGATGATGACGGTGAATATGAAGATGGTGGTGGTGGTGGTGGCGGCGGCGGCGGCGGCGGCGATGTTATGGATGATGTCGAAGAAGCTCATATGACTTCAGTGAGCGTAGCGAATCATGGGGGGTTGGTCATGGCGTCTAGAACTAGTGAACTTACGCTCTCTTTTGAGGGCGAGGTTTATGTGTTCCCCGCAGTTACTCCCGAAAAGCATGAAGTTCTGTTGTCAGACGCTTTATCCACAGAGCTTTATGCTGTGGCAATTAGCTATTTGTTCATGATCCATGATTACAAAGTACAAGCCGTGCTCTTGCTTCTTGGAGGGCGTGATGTGCCAACCGGTGTACCTACAATGGAAGTACCATACGATCATAATAACAGGGGTATGGTTGACACACCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGCAAGAATGGCCAATTTGCATCCTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAAGATGGTACTCGTTCAGAAACTGTTTTGCGGAAGTGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCAAGGACTTTATGTAATGCATGTGGCTTGATGTGGGCGAACAAGGGCACGTTGAGAGACCTCAGCAAGGGAGGGAGGAATGTGTCTCTGGATCATATGGAACCTGAAACCCCAATGGATGTCAAGCCCACAATCATGGAGGGAGAATTTTCGGGCATCCAGGATGAACATGGAACTCCTGAGGATCCTAGTAAAACCATGACTGAAGGCTCCAGTAATCCTTCCATTGACCCGGATGAGGAAGACATAAATGAAACCACTGGAGACCTTACAAATTCGTTGCGCATGCGAACTGTTAATCATTCAACAAATGACGATGAGCAGGAACCTCTTGTCGAACTTGCTAATCCTTCGGATACCGATATAGACATCCCCACTAACTTTGATTAG 1395 47.1 MRRNLERKPKVKRSHKDLLYKGTLRDLSKRSQDHPVTPAEQCESDGGKDLDCRHDKKKAIMAVSGFIQSGPRFVRAFEKLMAAANPQPLQARPFQEHVQVSTMMGDDDGEYEDGGGGGGGGGGGGDVMDDVEEAHMTSVSVANHGGLVMASRTSELTLSFEGEVYVFPAVTPEKHEVLLSDALSTELYAVAISYLFMIHDYKVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNVSLDHMEPETPMDVKPTIMEGEFSGIQDEHGTPEDPSKTMTEGSSNPSIDPDEEDINETTGDLTNSLRMRTVNHSTNDDEQEPLVELANPSDTDIDIPTNFD 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23310571 23327079 - CmPI595203_08g010970.1 Cmu08g1097 422583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1097 464 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 311 360 - -
Cmu08g1097 464 MobiDBLite consensus disorder prediction 104 125 - -
Cmu08g1097 464 ProSiteProfiles Tify domain profile. 149 184 IPR010399 -
Cmu08g1097 464 ProSiteProfiles GATA-type zinc finger domain profile. 310 358 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 MobiDBLite consensus disorder prediction 11 33 - -
Cmu08g1097 464 SMART GATA_3 310 363 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 Pfam GATA zinc finger 316 352 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 CDD ZnF_GATA 315 359 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 MobiDBLite consensus disorder prediction 1 49 - -
Cmu08g1097 464 ProSitePatterns GATA-type zinc finger domain. 316 343 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1097 464 Gene3D - 308 366 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu08g1097 464 ProSiteProfiles CCT domain profile. 245 287 IPR010402 GO:0005515(InterPro)
Cmu08g1097 464 Pfam CCT motif 245 286 IPR010402 GO:0005515(InterPro)
Cmu08g1097 464 PANTHER GATA TRANSCRIPTION FACTOR 28 102 402 IPR045280 GO:0006355(InterPro)
Cmu08g1097 464 MobiDBLite consensus disorder prediction 386 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1097 Cmu-Chr8:23310571 Cmu09g0157 Cmu-Chr9:1719868 3.30E-50 dispersed
Cmu08g1097 Cmu-Chr8:23310571 Cmu08g1098 Cmu-Chr8:23328077 6.90E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6683 PF06203 CCT 1.90E-13 CL0281 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1097 - - - 0.0