Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1098 ATGAAACTTTCCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGACTGGGACGAACTCAGACGACTATCAATGGAAGAGGAATCGACGACATAGTTGGGCGTGGATGTGGCGCCAGTGGGACGTCTAACAGAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACAAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCCTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCCCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGATGGTCAGGGTGATTGGATTTGCCAGACCTTTGCATGGAACCTATTGCATCTTATGA 1248 49.12 MKLSSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRLGRTQTTINGRGIDDIVGRGCGASGTSNRVESPFSRFSRLPTNTATPTVTTNFPKSSHSHNPLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRMVRVIGFARPLHGTYCIL 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23328077 23337964 - CmPI595203_08g010980.1 Cmu08g1098 422584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1098 415 ProSitePatterns GATA-type zinc finger domain. 363 390 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 Pfam CCT motif 295 337 IPR010402 GO:0005515(InterPro)
Cmu08g1098 415 ProSiteProfiles GATA-type zinc finger domain profile. 357 393 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 SMART GATA_3 357 415 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 CDD ZnF_GATA 362 409 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 MobiDBLite consensus disorder prediction 284 303 - -
Cmu08g1098 415 ProSiteProfiles Tify domain profile. 228 263 IPR010399 -
Cmu08g1098 415 Pfam GATA zinc finger 363 398 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 357 399 - -
Cmu08g1098 415 PANTHER GATA TRANSCRIPTION FACTOR 28 207 397 IPR045280 GO:0006355(InterPro)
Cmu08g1098 415 Pfam tify domain 231 262 IPR010399 -
Cmu08g1098 415 SMART tify_2 228 263 IPR010399 -
Cmu08g1098 415 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515(InterPro)
Cmu08g1098 415 MobiDBLite consensus disorder prediction 284 299 - -
Cmu08g1098 415 Gene3D - 359 409 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu08g1098 415 MobiDBLite consensus disorder prediction 328 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1098 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1098 Cmu-Chr8:23328077 Cmu09g1583 Cmu-Chr9:30098009 7.70E-59 dispersed
Cmu08g1097 Cmu-Chr8:23310571 Cmu08g1098 Cmu-Chr8:23328077 6.90E-40 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g0157 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cmu08g1098 . 204 397 Tify Gene Family AT4G24470 61.8 1.6e-59 226.9
Cmu09g1583 . 89 267 Tify Gene Family AT4G24470 59.7 3.6e-48 189.1
Cmu09g0157 . 1 288 Tify Gene Family AT1G51600 59.1 1.1e-86 317.0
Cmu09g1583 . 86 303 Tify Gene Family AT1G51600 54.4 6.7e-52 201.4
Cmu08g1097 . 155 358 Tify Gene Family AT1G51600 51.2 2.5e-46 183.0
Cmu08g1098 . 198 397 Tify Gene Family AT1G51600 52.3 8.7e-44 174.5
Cmu08g1098 . 204 397 Tify Gene Family AT4G24470 61.8 1.6e-59 226.9
Cmu09g1583 . 89 267 Tify Gene Family AT4G24470 59.7 3.6e-48 189.1
Cmu09g0157 . 1 288 Tify Gene Family AT1G51600 59.1 1.1e-86 317.0
Cmu09g1583 . 86 303 Tify Gene Family AT1G51600 54.4 6.7e-52 201.4
Cmu08g1097 . 155 358 Tify Gene Family AT1G51600 51.2 2.5e-46 183.0
Cmu08g1098 . 198 397 Tify Gene Family AT1G51600 52.3 8.7e-44 174.5
Cmu09g0157 . 1 230 Tify Gene Family AT3G21175 56.1 1.2e-58 223.4
Cmu06g0631 . 1 180 Tify Gene Family AT4G14713 53.1 1.1e-46 183.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012239 2 1 2 0 2 0 0 1 1 0 0 0 1 1 1 1 1 2 0 1 1 0 1 0 0 1 1 5 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6684 PF06203 CCT 1.20E-14 CL0281 Cmu TF