Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1098 ATGAAACTTTCCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGACTGGGACGAACTCAGACGACTATCAATGGAAGAGGAATCGACGACATAGTTGGGCGTGGATGTGGCGCCAGTGGGACGTCTAACAGAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACAAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCCTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCCCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGATGGTCAGGGTGATTGGATTTGCCAGACCTTTGCATGGAACCTATTGCATCTTATGA 1248 49.12 MKLSSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRLGRTQTTINGRGIDDIVGRGCGASGTSNRVESPFSRFSRLPTNTATPTVTTNFPKSSHSHNPLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRMVRVIGFARPLHGTYCIL 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23328077 23337964 - CmPI595203_08g010980.1 Cmu08g1098 422584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1098 415 ProSitePatterns GATA-type zinc finger domain. 363 390 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 Pfam CCT motif 295 337 IPR010402 GO:0005515(InterPro)
Cmu08g1098 415 ProSiteProfiles GATA-type zinc finger domain profile. 357 393 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 SMART GATA_3 357 415 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 CDD ZnF_GATA 362 409 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 MobiDBLite consensus disorder prediction 284 303 - -
Cmu08g1098 415 ProSiteProfiles Tify domain profile. 228 263 IPR010399 -
Cmu08g1098 415 Pfam GATA zinc finger 363 398 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1098 415 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 357 399 - -
Cmu08g1098 415 PANTHER GATA TRANSCRIPTION FACTOR 28 207 397 IPR045280 GO:0006355(InterPro)
Cmu08g1098 415 Pfam tify domain 231 262 IPR010399 -
Cmu08g1098 415 SMART tify_2 228 263 IPR010399 -
Cmu08g1098 415 ProSiteProfiles CCT domain profile. 295 337 IPR010402 GO:0005515(InterPro)
Cmu08g1098 415 MobiDBLite consensus disorder prediction 284 299 - -
Cmu08g1098 415 Gene3D - 359 409 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu08g1098 415 MobiDBLite consensus disorder prediction 328 365 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1098 Cmu-Chr8:23328077 Cmu09g1583 Cmu-Chr9:30098009 7.70E-59 dispersed
Cmu08g1097 Cmu-Chr8:23310571 Cmu08g1098 Cmu-Chr8:23328077 6.90E-40 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6684 PF06203 CCT 1.20E-14 CL0281 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1098 - - - 0.0