Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g1098 | ATGAAACTTTCCTCTCGAGGGAGTGAATGCTATGGTGCGGCATTTCACAGGGTTGGTTTGGTGTGGGTCATGGAATCATTGCCGTGCATTTATGATCGGATTGTGGAGATGCGTGCTTTGAGAGTGGGACCCACTTATAGACTGGGACGAACTCAGACGACTATCAATGGAAGAGGAATCGACGACATAGTTGGGCGTGGATGTGGCGCCAGTGGGACGTCTAACAGAGTCGAATCCCCATTCTCTCGTTTCTCTAGACTTCCCACAAACACAGCGACGCCTACTGTAACTACAAACTTCCCGAAGTCTTCACATTCTCACAACCCTCTCTTATCTTCTCATCTTCCTCCTTTCTCTTTTGCTCGGCTTCGATTCTCATCTATATATTCTCTCAATTCTCTCTCTGCCCATTCCTTCTTTCCCCATTCTTGCAATGCTCCAAACCCATTTGATTTTGTTCTGCCAGAGTTAATGTACGCACGCGCTCAACCGTTGACCATGGGCGACCAGATCGCCTCTGTCCCCGACTGCGGCGACAGCGGCGAGCCCTTGGATAATCGTCTCGTTCGATACGGAGCTCACTCTCTCGAAGATGGTGGTGGAGTAGGCGGCATGATCGAGGATCTCAACCCTGACGCCGTTTATGCTTCCGCCGGTGATGGTTCGGACTTGGCTGTTCAGCGCAACGATGGTTCAAGCCAGCTCACACTTTCATTCCGTGGTCAGGTTTATCTTTTCGATGCAGTCTCTCCTGAGAAGGTTCAAGCAGTATTGTTGTTGTTGGGTGGTTGCGAACTATCTTCTGGTCAGCAAAGCGTGGATTTGGTTAATCAAAATCAGAGGAATGCTGTGGACTTCCCTGGACGCAGTAGTCAACCCCAGAGGGCAGCCTCGTTAAATCGGTTTCGACAGAAAAGGAAGGAGCGATGTTATGATAAAAAAGTTAGATACAGTGTTCGTCAGGAGGTTGCTCTCAGGATGCAACGCAACAAAGGACAGTTTACTTCTTCCAAGAAGCCTGATGGTTCGTATAGTCATGGCAGTGTCTCGGAGTTAGGTCAAGATGAAAGTCCACCAGAAACTTCATGCACAAATTGTGGCATAAGTTCGATGGCAACCCCAATGATGCGGCGAGGACCATCTGGGCCTAGATCACTTTGCAATGCCTGTGGACTCTTTTGGGCAAACCGGATGGTCAGGGTGATTGGATTTGCCAGACCTTTGCATGGAACCTATTGCATCTTATGA | 1248 | 49.12 | MKLSSRGSECYGAAFHRVGLVWVMESLPCIYDRIVEMRALRVGPTYRLGRTQTTINGRGIDDIVGRGCGASGTSNRVESPFSRFSRLPTNTATPTVTTNFPKSSHSHNPLLSSHLPPFSFARLRFSSIYSLNSLSAHSFFPHSCNAPNPFDFVLPELMYARAQPLTMGDQIASVPDCGDSGEPLDNRLVRYGAHSLEDGGGVGGMIEDLNPDAVYASAGDGSDLAVQRNDGSSQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSVDLVNQNQRNAVDFPGRSSQPQRAASLNRFRQKRKERCYDKKVRYSVRQEVALRMQRNKGQFTSSKKPDGSYSHGSVSELGQDESPPETSCTNCGISSMATPMMRRGPSGPRSLCNACGLFWANRMVRVIGFARPLHGTYCIL | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23328077 | 23337964 | - | CmPI595203_08g010980.1 | Cmu08g1098 | 422584 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g1098 | 415 | ProSitePatterns | GATA-type zinc finger domain. | 363 | 390 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g1098 | 415 | Pfam | CCT motif | 295 | 337 | IPR010402 | GO:0005515(InterPro) | |
Cmu08g1098 | 415 | ProSiteProfiles | GATA-type zinc finger domain profile. | 357 | 393 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g1098 | 415 | SMART | GATA_3 | 357 | 415 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g1098 | 415 | CDD | ZnF_GATA | 362 | 409 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g1098 | 415 | MobiDBLite | consensus disorder prediction | 284 | 303 | - | - | |
Cmu08g1098 | 415 | ProSiteProfiles | Tify domain profile. | 228 | 263 | IPR010399 | - | |
Cmu08g1098 | 415 | Pfam | GATA zinc finger | 363 | 398 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu08g1098 | 415 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 357 | 399 | - | - | |
Cmu08g1098 | 415 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 207 | 397 | IPR045280 | GO:0006355(InterPro) | |
Cmu08g1098 | 415 | Pfam | tify domain | 231 | 262 | IPR010399 | - | |
Cmu08g1098 | 415 | SMART | tify_2 | 228 | 263 | IPR010399 | - | |
Cmu08g1098 | 415 | ProSiteProfiles | CCT domain profile. | 295 | 337 | IPR010402 | GO:0005515(InterPro) | |
Cmu08g1098 | 415 | MobiDBLite | consensus disorder prediction | 284 | 299 | - | - | |
Cmu08g1098 | 415 | Gene3D | - | 359 | 409 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cmu08g1098 | 415 | MobiDBLite | consensus disorder prediction | 328 | 365 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1098 | Cmu-Chr8:23328077 | Cmu09g1583 | Cmu-Chr9:30098009 | 7.70E-59 | dispersed | |
Cmu08g1097 | Cmu-Chr8:23310571 | Cmu08g1098 | Cmu-Chr8:23328077 | 6.90E-40 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6684 | PF06203 | CCT | 1.20E-14 | CL0281 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g1098 | - | - | - | 0.0 |