Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1106 ATGCTCAATTCAACAATGGTTCATCCTGGTTCTACCCAATTTTCACATAAATTGGGGATTCAAAGTGTTCATGGATGCAATAAGTTACATATTAGTATCAAGGGAAAGACTCGTGTACATCTTGTTACTATCGTTCCTTCATCACATGGTCTGAGGCATGATCCTGTAAGTCTTCAGCTCTTACGGAGTGTAAGTCGACCAATGTATCCTGTGTCTTCCAGAGCAAATGTTTTTGTGTGTCGATCTGTTCTGGAATCAGGTGGTGGAGCTGGGACTGCCGTTCTAAACTCTGCAGCTGTAGTTTTGACAAGATCTTATGATGCTTTACGAGGCAGTCCTCTGTTACTTAAATTAATTCCAGCAGCTTGTGTCATTGCTTTTGCTGCTTGGGGTGTTGGACCTCTTATGCGTTTGGGGAGGATACTATTTCTTCATGAGCCGGATGGCAGTTGGAAGAAAAGTAGTACATACTATGTTACGACTTCTTATGTTCAGCCTTTACTGCTATGGACTGGAGCTACACTGATCTGCAGGGCATTGGATCCAGTAGTTTTACCTTCAGTAGCCAGTCAGGCTGTCAAACAACGACTTCTGAATTTTGTTAGATCTTTGTCTACTGTTCTCGCATTTGCCTATTGTATATCCAGCTTGATTCAACAAGTACAAAAATTCGCTTCTGAATCAAATGACTCAAGTGATGCAAGAAATATGGGCTTTGATTTTGCTGGGAAAGCTGTTTACACTGCAGTCTGGATTGCTGCCCTTTCATTGTTCATGGAGTTGCTCGGTTTTTCTACCCAGAAGTGGCTAACAGCTGGGGGTCTCGGAACCGTATTGCTTACCCTTGCTGGTCGTGAGATATTTACTAACTTCCTTTCAAGTGTAATGATTCATGCAACACGACCATTTGTCGTAAATGAATGGATTCAAACAAAGATTGATGGATATGAAGTCTCAGGAACGGTTGAGCATGTTGGTTGGTGGTCGCCAACCATCATCCGAGGCGATGATCGTGAAGCAGTCCATATTCCAAATCACAAATTCACGGTTAGTATTGTGAGGAATCTTACCCAAAAGACTCATTGGCGTATCAAGACTCATCTTGCCATCAGCCACTTAGATGTTAATAAGATCAATTATATTGTAGCTGATATGCGCAAAGTTCTGTCCAAGAATCCTCAAGTTGAACAGCAAAGGTTACACCGCAGAATTTTTTTGGATAACGTCAATCCTGAAAACCAGGCTCTTATGATCATGGTTTCTTGCTTTGTGAAAACTTCTCGTTTTGAAGAATACCTATGTGTCAAGGAGGCAATTCTCTTGGATCTCCTCAGGGTTATCAGCCACCATAGGGCCCGCCTCGCCACCCCCATTCGCACTGTGCAGAAAATATATGGCGAAGCTGATTTGGAGAATGTACCATTTTCTGAGACCATGTATTCTCATTCCAACCGTCCTCTGCTTCTTATTGAGCCATCTTATAAAGTCAATGGTGATGATAAAACCAAAGTCTCTAGTCGTCCCACTCGTTCATCTAACGAAGAAAAGGAAGCGAAACAAGAGGCAGTCTCAATGTCAGGGACAAAAGCCCCCGACACAGCTGGATCAACATCAAATCTAGCAAGCAATGAGATAAAAGGAGAAAAGAAAGATGTCATAGGAATGAATTCCAAGGACAATATGCCACGAGGGACTCCGCCCAAAAGATCTCCCTCAGCTTCCAGTCCTAGCAGTGAGAAAGCTGATATTCCTTCCTCAAGCTCACAGAATAAGCAAGACGGCGAGAAGACCTCTGCATCGCCATCAGTGGCGAGGGCACCATTGGAGGAGAATATTGTCCTGGGAGTTGCGTTAGAAGGCTCGAAAAGAACTCTTCCAATTGATGAAGATTTGGATTCAAAAGAAATTTCGACACAGAGGAATGGGAGTGAGTTTCCCGGCAACAGTAAGGATATGAAAGATGGCCAAATGCCTGCAGTTCCAGGTGCGACAAAAAATGATTGA 2004 43.21 MLNSTMVHPGSTQFSHKLGIQSVHGCNKLHISIKGKTRVHLVTIVPSSHGLRHDPVSLQLLRSVSRPMYPVSSRANVFVCRSVLESGGGAGTAVLNSAAVVLTRSYDALRGSPLLLKLIPAACVIAFAAWGVGPLMRLGRILFLHEPDGSWKKSSTYYVTTSYVQPLLLWTGATLICRALDPVVLPSVASQAVKQRLLNFVRSLSTVLAFAYCISSLIQQVQKFASESNDSSDARNMGFDFAGKAVYTAVWIAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIDGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVSIVRNLTQKTHWRIKTHLAISHLDVNKINYIVADMRKVLSKNPQVEQQRLHRRIFLDNVNPENQALMIMVSCFVKTSRFEEYLCVKEAILLDLLRVISHHRARLATPIRTVQKIYGEADLENVPFSETMYSHSNRPLLLIEPSYKVNGDDKTKVSSRPTRSSNEEKEAKQEAVSMSGTKAPDTAGSTSNLASNEIKGEKKDVIGMNSKDNMPRGTPPKRSPSASSPSSEKADIPSSSSQNKQDGEKTSASPSVARAPLEENIVLGVALEGSKRTLPIDEDLDSKEISTQRNGSEFPGNSKDMKDGQMPAVPGATKND 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23394474 23399993 + CmPI595203_08g011060.1 Cmu08g1106 422592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1106 667 Gene3D - 303 358 IPR023408 -
Cmu08g1106 667 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 6 654 IPR045042 -
Cmu08g1106 667 MobiDBLite consensus disorder prediction 496 522 - -
Cmu08g1106 667 Pfam Mechanosensitive ion channel, beta-domain 287 357 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Cmu08g1106 667 SUPERFAMILY Sm-like ribonucleoproteins 287 357 IPR010920 -
Cmu08g1106 667 Gene3D - 198 301 - -
Cmu08g1106 667 MobiDBLite consensus disorder prediction 493 667 - -
Cmu08g1106 667 MobiDBLite consensus disorder prediction 526 543 - -
Cmu08g1106 667 MobiDBLite consensus disorder prediction 567 599 - -
Cmu08g1106 667 MobiDBLite consensus disorder prediction 623 637 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1106 Cmu-Chr8:23394474 Cmu10g1572 Cmu-Chr10:11734112 1.80E-190 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1106 K22047 - csv:101213477 1199.88