Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1107 ATGGCGAGGGAGAAAATCAAGATAAAGAAGATTGATAACCTAACGGCGAGACAGGTGACATTCTCTAAGCGAAGGAGAGGGCTTATCAAGAAGGCGGAGGAGCTATCGGTGCTCTGCGACGCCGAAGTAGCGCTGCTCATCTTCTCCGCCACCGGAAAGTTCTTCGAATATTCCAACTCCAGTGTTAAGGATGTTATAGCTAGATATAATTTGCACTCTAGTAATCTTGGAAAGTTGGAATATCCATCCCTTGAGCTGCAGATGAGGGGAGAAGATCTTCAAGGATTGAACTTAGAAGATCTGAAGCAATTGGAAAGATTGCTTGAAGTTGGTCTCACACGAGTTCTTCAAACCAAGGAAAAGAAGATTATGAGTGAAATTAGTGCGCTTGAGCTTAAGGGAGCGAGGCTGATGGAAGAAAACAAGATGCTTAGACAGCAGATGTTAAGGTTGTCGAATGAAAGAACGCCAGTGCTCGTGGATTCCGACGTTCATGTGGCGGCGGAAGAAGGGGTTTCGTCGGAATCCGCCGCCAATGTCTGCAGCTGCAACAGCGGCCCTCCTGCCGACGACGACAGCTCCGACACTTCCCTCAAATTAGGCCATGCAAGTAACATAAAAGCAAGCAAAGGCGTGAGGGAGCATCCAGCTGCTCATTGGTTCCATTTTGAGCAACCCAAGTGGGCCAAAAGCTTTGACACAAATCTGTGTTTGGTAAAACTCTGGCTTCTCCTCCCTGTTCATCGGAGCTTGCGCTGCGCTCTGATTTACGAATGTCAACACACTGAGTTCCTTTTGACTCGTTTTCAACTCACCGATCTTCCCTTCATCCCTCTCTTCGCCATGAAGAACGCCCCCGTCAAAGGCCTTGAAGTTTTCGATTTCACCGAAGAAGACGAACTTCCTGAATTGATCTCCGAGAAGCGCCTCAGCAAATTTAAAAACCCTAATCTCGAATCTAACGCTGTTTTGAAGTATGAATTTCTCGAATGTGGGAAGGAGATTGAAAATCCACACATGGATGTTGATTTGGATGAATGTAATCGTGGTTGTGACAATGGTATTTCACATAATCCTTTGGGCACAACTAAAGAGCAACAAATCATGGAAGAAGAGAAATATCAATTGGATGCCAATGCAAAATCAGAAGTGAAATGCCATTTGCAAGATATGATCGTGCAAGTAGATAATCATGTGACACAAAGCCTTTGCTCTCAACTTGGGAAAATTGGATCTAGCTCTCAAAGTCCTACCCAGGGGTTAACTTGCACTCTTCCTGAGTTTACTGCTGAAAGTGAGCAAGTTGATGCACTGTCAGATCCTAATGGAAGCATAAAAGGGAGTTCTCCAGTGAGCCCTCCTTCAGAAACTGTAGAGGATGGTGTTTTGTTGAACGGGAAGTCTTCAGATAATTGCTCATCTGACAATGAAAAGGATGATCTTAGTGACGAGGTTGTCCTTTATCCCGATTATATTGTATGTGGAGATTTTTACTGTGCCAGTCCCTCCTTAACCTTTTCACATAATGGCATCAAAATTAATGGTTTTGCTGATTATGGAAGCAATGAGTACCTTAACCTTGAATGGAGAGTCGACGATGTCATTCATATTGAGTGCCAGTGCTTTCAAAGGGTTGAATATGTGATGATCAAGCTCCATGTTATCTCAAAAGATGCTGGTGAATGTGACAATGCGTGTGACAGTTCTGGCATTAAGGAAGTAAAGATTGTTCTTGTTGATTCTTACTGGTCTGAGAAACAACAAAAAATCAGATCTTTGGATTCCAGATACATGGCTATTTGGAATATGTCTCTCGATGTGGGAATAGGATCCGATGATGATGATTTAAGTGGGCAGAGACACTATTTTCCCAACTTTGATGAGCCTTTTGAAGAAGTTGTCTATCCCAAAGGAGATCCAGATGCTGTTTCCATTAGTAAGAGGGATGTTGACTTGCTGCAACCAGAGACGTTTGTCAATGACACAATCATTGACTTTTACATCCAGTATTTGAAGAGCCAGATAGATCCCAAGGAGAAGCATAGATTTCACTTCTTCAATAGTTTTTTCTTTAGGAAGCTGGCAGACCTTGATAAAGATCCATCAAGTGCTTCAGATGGCAGAGCTGCCTTTCTACGTGTTCGGAAATGGACACGGAAAGTGGATTTATTTGACAAGGATTATATCTTCATTCCTATAAACTTCAATCTTCATTGGAGCTTAATGGTCATATGCCACCCTGGCGAAGTGGCTAGATATAGTGATGAAGACCTGATGAAGTCAATGAAAGTACCGTGTATATTGCATATGGATTCTATTAAAGGAAGTCACGCAGGTCTTAAAAATCTCATTCAAAGTTATTTGCTGGAAGAATGGAAAGAGAGAAACAAGGAGACACCTGAAGATATTTCAACAAAATTTAAGAACCTTCGGTTCCTCCCACTTGAGCTTCCGCAGCAGGAAAATTCATTTGATTGCGGATTGTTCTTGCTCCACTATCTAGAACTTTTTCTGGCAGAAGCTCCTCTTGATTTTAGCCCGTTCAAAATCTCCAAGCTTTCAAAATTTCTTAATGTGGATTGGTTCCCACCTGCTGAGGCCTACCTCAAGCGAACTTTAATACAGAGATTAATTTTCGAAATCCTTGATAACCGATCTCGAGAAATGTCCGCAGCTGCTTGCAGTGATGAACTCTTGTCTAAATTTCCATCCAATAATGAGGATGAAACTGGTCTGGAGCTTCTTCCCGAAAGAGGAAGCCCAGCCGTGGCACGCAATCACAATTTGCCAAGCTCACAAGCTGTTGATGGGATTGAAATTACTCTATTATCTGAATCTTCCAGTAGACACAACCACTTCATTGACGGTTCTGGCTTGGTTGTCAGAGAATTATTTGAACCAGGCGCCTCTAATGGACCGTTACTTGGACACTACCAATCTTTTGGTCAAACATCATCGTATTTTGATTCAAATGGTACTGTGCTGGAGGACACAGATGCAGAAACTGGAGACCGTTTCATGTACTTACCTCCACAACAGGATGGTTTGCAGCCAATTGATGCAATGACATCTCAAGCTTGTCGTTTTCCGTGTTCATCGAGAGGCCTTGAATCGGACCCTGCTTTTGACTTATGCATGTCTATTCAACAAGAGCAAGGCGGGGGCATTGCCTCGTCCCCGACAGATGACTTGGAAGACGTGGGAATCATTGAACATTCCAATGTTAGGGAAGCAAGTCCTGGTAACACAGAAGAAAGGAACGGAAAAGGGCCTCTACCGATCGAGAAGGAGAACCTGGAACCTGTAGCAGAATGCCCTACTTCTGCTGCTACCACGAAGAAAGATTTTGATGCCATTGTCTTCTCTCAAGATGACACTAACGAGGAAAATAACGGATCTGATAATCCCATGTGTAAAGAGACTCTCGTTGCACTGCCGCATCTAGATAAAGATATAACAACCAAAACAGACGTCGAACATGATGATGTGCTGGTGGTTGCTTCGGTTACTGAGGTGGACTTAGACGAGCAACCCCCTGCCAAGAAACCAAGGCGTTCGTCATACCACGAAGAAGCGAGTAACAACGGTGTCAGAGAAGTGGGAGCATCAGCATCGGTAATCACCGTCACACCCCGTTTACAGAAAACGGAAAAAACTGTTATTTTGGCTTTCCTCTCAGTCCCAACTCCGAATCTTCTTTGCCTTCAAAATCCAGTGTCCAATTCAAGCTGTGATCTCCAACAAACCAACAATGGAGCTTCACTACTACACTCATCGCAGCCCATCCCACAGAGCGGCTCTTGCTGGTGTTTTTCTTCTTCTCTTTCCTCTTTTTTATCCCAATCTCTTCCATCCCTTGGGTCGCGCTTCGCCTTCCTTGTTCTCTGTACGTTCTTCCTCCACTCCTATCCTTTTCCCTACGTTCCATCAACGATTCCTCTTATTTTGAACTGCAAAATTATAATGAGATCTGTTGCTTGCTTGCTTGCCCTAATTGTACCTAGGATTTTCCATGATTTGCGGGTTCAGCAAAATATGCTCATATTGGAATGGATTTCTCCAAAACCGAGGCACCCGATTTTGCTACACAGTGCTTTGCATCGAATCACGACATTAGAAGACCAGAGAGAGATATGGTCTCCATTGCCAAATCAAGGATGGAAACCTTGTCTGAAGCCTACAAGAATGGAATTATCACCAAGAAAATCTCAAGGTTACATTCAAGTGTTCTTAGATGGAGGATTGAATCAGCAAAGAATGGGGATCTGTGATGCAGTTGCCGTTGCCCGAATACTAAATGCAACATTGGTCATACCTCATCTTGAAGTTAACGCTGTTTGGAAGGATTCCAGTTCGTTTGGAGAAATTTTTGATGTGGATCACTTCATTAATGTCCTGCGTGATGATATATCAATAGTCAAAGAGCTGCCTGCTGAATACTCCTGGAGCACAAGGGAATACTATGCTACTGGAATCCGTAATACTAGAATTAAAACAGCTCCCACTCAAGCTTCTGCAAACTGGTACTTGGAAAATGTCTTGCCCGTATTGCAAAGCAATGGGATTGCTGCTATTGCTCCATTCTCTCACCGTCTGTCTTTCAACGACTTGCCTACTGAGATTCAGCATTTGCGTTGTAAGGTCAATTTCAAGGCATTAGCATTTGTTCGTGACATCACTAAATTAGGAGATACCATTGTCAACCGCCTTCGTTACTCTTCAAATCAAAAGGGAATGGAAGGCGCTGAGAATCTGCTAGAGGATGAGACAAGAAAATTGGAAGGTGGGAAATTTGTTGTATTGCATCTCCGATTCGATAAGGATATGGCTGCTCATTCAGCTTGTGAGTTTGGTGGGGGCAAAGCTGAGAGACTAGCTCTTGCAAAATATCGTCAAGTGATTTGGCAGGGAAGGGTTCCTAACTCACAGTTCACTGATGAAGAGTTGAGATATCAGGGACGTTGCCCCTTGACTCCTGAAGAGATAGGATTGCTGCTAGCTGCTCTGGGGTTTAGCAATAGTACACGTGTCTATCTTGCTATACACAAGGTTTATGGTGGGGAAGCAAGAGTCTCAACTTTGCGCAAAATATTCCCGCTCCTGGAAGATAAGAAGAGCCTTACCTCTCCCTTGGAACGTGCTCGTGTAGCAGGCAAAGCATCATTATCAGCTGCAGTTGATTATTATGTGAGCATGCACAGCGACATCTTCATTTCTGCCTCGCCTGGAAACATGCACAACGCTCTGGTGGGACATCGGGCATACTTGAACATGAAAACTATAAGGCCAAACATGGTACTGTTGGGTCAGCTGTTCCTCAATAAGAGCATGGAATGGTCAGAATTCAGGAAGGCTGTTCTCGCTGGACATAAAAATAGACAAGGGCAGATCAGGTTAAGGAAAGAGAAGCAATCCATATACACTTATCCTGCTCCTGATTGCATGTGCGCTAACGTTTGA 5460 43.66 MAREKIKIKKIDNLTARQVTFSKRRRGLIKKAEELSVLCDAEVALLIFSATGKFFEYSNSSVKDVIARYNLHSSNLGKLEYPSLELQMRGEDLQGLNLEDLKQLERLLEVGLTRVLQTKEKKIMSEISALELKGARLMEENKMLRQQMLRLSNERTPVLVDSDVHVAAEEGVSSESAANVCSCNSGPPADDDSSDTSLKLGHASNIKASKGVREHPAAHWFHFEQPKWAKSFDTNLCLVKLWLLLPVHRSLRCALIYECQHTEFLLTRFQLTDLPFIPLFAMKNAPVKGLEVFDFTEEDELPELISEKRLSKFKNPNLESNAVLKYEFLECGKEIENPHMDVDLDECNRGCDNGISHNPLGTTKEQQIMEEEKYQLDANAKSEVKCHLQDMIVQVDNHVTQSLCSQLGKIGSSSQSPTQGLTCTLPEFTAESEQVDALSDPNGSIKGSSPVSPPSETVEDGVLLNGKSSDNCSSDNEKDDLSDEVVLYPDYIVCGDFYCASPSLTFSHNGIKINGFADYGSNEYLNLEWRVDDVIHIECQCFQRVEYVMIKLHVISKDAGECDNACDSSGIKEVKIVLVDSYWSEKQQKIRSLDSRYMAIWNMSLDVGIGSDDDDLSGQRHYFPNFDEPFEEVVYPKGDPDAVSISKRDVDLLQPETFVNDTIIDFYIQYLKSQIDPKEKHRFHFFNSFFFRKLADLDKDPSSASDGRAAFLRVRKWTRKVDLFDKDYIFIPINFNLHWSLMVICHPGEVARYSDEDLMKSMKVPCILHMDSIKGSHAGLKNLIQSYLLEEWKERNKETPEDISTKFKNLRFLPLELPQQENSFDCGLFLLHYLELFLAEAPLDFSPFKISKLSKFLNVDWFPPAEAYLKRTLIQRLIFEILDNRSREMSAAACSDELLSKFPSNNEDETGLELLPERGSPAVARNHNLPSSQAVDGIEITLLSESSSRHNHFIDGSGLVVRELFEPGASNGPLLGHYQSFGQTSSYFDSNGTVLEDTDAETGDRFMYLPPQQDGLQPIDAMTSQACRFPCSSRGLESDPAFDLCMSIQQEQGGGIASSPTDDLEDVGIIEHSNVREASPGNTEERNGKGPLPIEKENLEPVAECPTSAATTKKDFDAIVFSQDDTNEENNGSDNPMCKETLVALPHLDKDITTKTDVEHDDVLVVASVTEVDLDEQPPAKKPRRSSYHEEASNNGVREVGASASVITVTPRLQKTEKTVILAFLSVPTPNLLCLQNPVSNSSCDLQQTNNGASLLHSSQPIPQSGSCWCFSSSLSSFLSQSLPSLGSRFAFLVLCTFFLHSYPFPYVPSTIPLILNCKIIMRSVACLLALIVPRIFHDLRVQQNMLILEWISPKPRHPILLHSALHRITTLEDQREIWSPLPNQGWKPCLKPTRMELSPRKSQGYIQVFLDGGLNQQRMGICDAVAVARILNATLVIPHLEVNAVWKDSSSFGEIFDVDHFINVLRDDISIVKELPAEYSWSTREYYATGIRNTRIKTAPTQASANWYLENVLPVLQSNGIAAIAPFSHRLSFNDLPTEIQHLRCKVNFKALAFVRDITKLGDTIVNRLRYSSNQKGMEGAENLLEDETRKLEGGKFVVLHLRFDKDMAAHSACEFGGGKAERLALAKYRQVIWQGRVPNSQFTDEELRYQGRCPLTPEEIGLLLAALGFSNSTRVYLAIHKVYGGEARVSTLRKIFPLLEDKKSLTSPLERARVAGKASLSAAVDYYVSMHSDIFISASPGNMHNALVGHRAYLNMKTIRPNMVLLGQLFLNKSMEWSEFRKAVLAGHKNRQGQIRLRKEKQSIYTYPAPDCMCANV 1819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23400926 23428494 - CmPI595203_08g011070.1 Cmu08g1107 422593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1107 1819 MobiDBLite consensus disorder prediction 178 198 - -
Cmu08g1107 1819 MobiDBLite consensus disorder prediction 433 479 - -
Cmu08g1107 1819 Gene3D - 635 879 - -
Cmu08g1107 1819 Pfam Ulp1 protease family, C-terminal catalytic domain 658 859 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu08g1107 1819 Pfam GDP-fucose protein O-fucosyltransferase 1406 1756 IPR019378 -
Cmu08g1107 1819 MobiDBLite consensus disorder prediction 433 455 - -
Cmu08g1107 1819 FunFam Probable ubiquitin-like-specific protease 2B 683 814 - -
Cmu08g1107 1819 CDD O-FucT_plant 1406 1761 IPR024709 -
Cmu08g1107 1819 ProSiteProfiles K-box domain profile. 55 154 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu08g1107 1819 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 PANTHER UBIQUITIN-LIKE-SPECIFIC PROTEASE 2B-RELATED 282 1236 - -
Cmu08g1107 1819 MobiDBLite consensus disorder prediction 1175 1192 - -
Cmu08g1107 1819 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 MobiDBLite consensus disorder prediction 1174 1196 - -
Cmu08g1107 1819 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 FunFam Transcription factor, MADS-box 13 83 - -
Cmu08g1107 1819 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cmu08g1107 1819 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cmu08g1107 1819 Gene3D - 683 814 - -
Cmu08g1107 1819 Pfam K-box region 87 148 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cmu08g1107 1819 ProSiteProfiles Ubiquitin-like protease family profile. 643 837 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu08g1107 1819 Coils Coil 127 154 - -
Cmu08g1107 1819 SUPERFAMILY Cysteine proteinases 635 880 IPR038765 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1256 Cmu-Chr4:27004751 Cmu08g1107 Cmu-Chr8:23400926 2.20E-12 dispersed
Cmu08g1107 Cmu-Chr8:23400926 Cmu11g1554 Cmu-Chr11:27824669 2.00E-79 dispersed
Cmu04g1038 Cmu-Chr4:24938520 Cmu08g1107 Cmu-Chr8:23400926 5.80E-12 transposed
Cmu05g2581 Cmu-Chr5:34530244 Cmu08g1107 Cmu-Chr8:23400926 3.80E-32 transposed
Cmu06g0499 Cmu-Chr6:5559201 Cmu08g1107 Cmu-Chr8:23400926 7.20E-19 transposed
Cmu08g0050 Cmu-Chr8:1138463 Cmu08g1107 Cmu-Chr8:23400926 6.60E-85 transposed
Cmu09g1576 Cmu-Chr9:29943293 Cmu08g1107 Cmu-Chr8:23400926 2.80E-124 transposed
Cmu01g1782 Cmu-Chr1:31510940 Cmu08g1107 Cmu-Chr8:23400926 2.20E-52 wgd
Cmu01g1768 Cmu-Chr1:31401104 Cmu08g1107 Cmu-Chr8:23400926 1.40E-25 wgd
Cmu11g1474 Cmu-Chr11:27042685 Cmu08g1107 Cmu-Chr8:23400926 9.20E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6686 PF10250 O-FucT 4.20E-62 CL0113 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1107 - - - 0.0