Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1111 ATGAAAGGCGATTTTGCTCATCCCAAGAGCAAAACTTCCAATATGTTATCCAAATTCCATCTCTCCGCCCACCCTTTTTCCCACCATCCTCCGCCGCAACAACCCGCCGACGAGCCCACCGCCGCCGTGCCTTCCCCCTTTAAACACCGCCCGGAGCTAACTTCCACCGCTGATGGTTCCACCATCGAGGTGGTCCGACGGCCAAGGGGTCGCCCACCGGGTTCCAAAAATAAACCCAAACCGCCTCTTGTTATAACCCGGGAACCCGAACCGGCTATGCGGCCGTACGTTCTAGAAGTGCCTGGTGGAAACGACGTCGTTGAAGCTATTTCACGATTTTGCCGTCGCAAAAATATGGGCCTTTGTGTTCTTAACGGTTCCGGTACCGTTGCTAATGTCTCTCTCCGTCAACCCTCCGCCACACCTGGCGCTACCGTTACTTTTCACGGCCGTTTTGAGATTCTCTCCATTTCCGCTACCGTCTTCCCTCAACCCACGCCGTTACCTTTGCCTAATGGTTTTACCATCTCCCTCGCCGGACCTCAGGGTCAAATCGTCGGCGGTTTGGTCGCCGGTGCTTTAATTGCCGCCGGTACCGTTTTTGTCGTTGCCTCGTCGTTCAATAATCCGCTGTACCACCGGCTTCCCGATGAGGAAGAGATTAAGAATTTGGGATCCGGTGGCGGCAGTGGCGGTGGCGAAGTTCATTCCCCACACGTCTCTGGCGGTGGAGATAGTAGCGGGCACGGGCACGGGCAGAGTCAAGGGCACGGGCAGCTGGTGGAATCGTGTGGAATGGCTATGTATAGTTGCCACGCTCCGTCCGACGTAATATGGGCGCCGACGGCGAGACAACCGCCGCCGCCGCCGTACTAA 876 56.74 MKGDFAHPKSKTSNMLSKFHLSAHPFSHHPPPQQPADEPTAAVPSPFKHRPELTSTADGSTIEVVRRPRGRPPGSKNKPKPPLVITREPEPAMRPYVLEVPGGNDVVEAISRFCRRKNMGLCVLNGSGTVANVSLRQPSATPGATVTFHGRFEILSISATVFPQPTPLPLPNGFTISLAGPQGQIVGGLVAGALIAAGTVFVVASSFNNPLYHRLPDEEEIKNLGSGGGSGGGEVHSPHVSGGGDSSGHGHGQSQGHGQLVESCGMAMYSCHAPSDVIWAPTARQPPPPPY 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23471221 23472096 + CmPI595203_08g011110.1 Cmu08g1111 422597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1111 291 PIRSF ESCAROLA 9 290 IPR014476 GO:0003680(InterPro)
Cmu08g1111 291 FunFam AT-hook motif nuclear-localized protein 94 226 - -
Cmu08g1111 291 MobiDBLite consensus disorder prediction 1 86 - -
Cmu08g1111 291 Gene3D - 93 225 - -
Cmu08g1111 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 258 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu08g1111 291 MobiDBLite consensus disorder prediction 222 258 - -
Cmu08g1111 291 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Cmu08g1111 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 92 219 - -
Cmu08g1111 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 208 IPR005175 -
Cmu08g1111 291 CDD DUF296 94 207 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1870 Cmu-Chr3:25327771 Cmu08g1111 Cmu-Chr8:23471221 3.90E-35 dispersed
Cmu08g1111 Cmu-Chr8:23471221 Cmu09g1156 Cmu-Chr9:12476026 2.00E-45 dispersed
Cmu11g1456 Cmu-Chr11:26790324 Cmu08g1111 Cmu-Chr8:23471221 5.00E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1111 - - - 0.0