Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1125 ATGGTGGTTAGAAAAGTCGGCAAATACGAGGTCGGGAGGACGATTGGGGAAGGTACTTTCGCAAAGGTAAAGTTTGCTCAGAACACTGAGACTGGCGAGAGTGTTGCTATGAAAGTCCTCGATCGGAGCACCATAATCAAGCACAAGATGGTCGACCAGATAAAGAAGGAGATTTCTATCATGAAGCTTGTGAGGCACCCTTATGTTGTTCGTCTTCATGAGGTTCTTGCAAGCCGTACAAAGATTTACATAATCTTGGAGTACATTACTGGTGGTGAATTGTTTGACAAAATAGTTCATAATGGACGGCTTAGTGAAGCTGAATCTAGGAAGTATTTCCAACAGCTAATTGATGGTGTAGATTATTGCCACAGCAAGGGAGTATACCACAGAGATTTAAAGCCTGAGAATCTGCTACTTGACTCCCTCGGTAATTTAAAGATCTCAGACTTTGGTCTGAGTGCATTGCCTGAACAAGGAGTTAGCCTACTCCGCACAACATGTGGGACTCCAAACTATGTAGCACCAGAGGTGCTCAATCACAAGGGTTATGATGGTGCTATGGCAGACGTTTGGTCCTGTGGGGTAATCCTTTATGTGTTGATGGCAGGATATCTTCCATTTGACGACCTTGATCTCACCACGTTATATAGTAAGATTGAGAGAGCCGACTTTTCATGTCCCTCTTGGTTCCCGGTGGGGGCAAAAGCCTTAATCCAAAGAATATTTGATCCCAATCCTTCAACTCGTATTACAATTGAACAGATCAGAGAGGAAGAGTGGTTCAAGAAAAATTATGTTTCTGTCAAACTGTTTGAAGATGAAGATGTAAATCTGGATGATGTAAATGCTGTCTTTGATGATCCTGAGGAACAACTGACAGAAGAACAACACGGTCACGACGATATGAGCCCTCTGGCCCTTAATGCATTTGATTTAATAATTCTATCTCAAGGCTTAAACCTGGGAACAATGTTTGACCGTGGCCGGGATTCTATGAAGTACCCGACACGCTTCATCTGCCAAAAGCCTGCAAAGGTTTTACTGTCAACAATGGAAGTTGTAGCTCAATCAATGGGTTACAAGACTCACATTCGCAATTACAAGATGAGAGTAGAAGGCCCATCGGCAAGCAAAACTTCGTATTTCTCAGTCATTATGGAAATTTTCGAAGTTGCTCCCACATTCTTTATGGTGGACATCCAGAAAGCAGCAGGGGAAACCAGCGAATACCTCAAGTTCTACAAGAGCTTTTATAGCAAACTTGAAGATATCATCTGGAAACCTTCAATTGACACCGGCAAATCAAGGATCACCAAGAACAAGAACCGATGCCTCGCCATTCTTTTGCTAAATAGAGAAGTAACAATGGCATTGTCGTGGTATTTGTCCGAAGCCCAATATCAGCTGGTTATTCTCCTGATCTTACTTATAGAAGAAATTAGTTTCATATGA 1455 42.34 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIIKHKMVDQIKKEISIMKLVRHPYVVRLHEVLASRTKIYIILEYITGGELFDKIVHNGRLSEAESRKYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSLGNLKISDFGLSALPEQGVSLLRTTCGTPNYVAPEVLNHKGYDGAMADVWSCGVILYVLMAGYLPFDDLDLTTLYSKIERADFSCPSWFPVGAKALIQRIFDPNPSTRITIEQIREEEWFKKNYVSVKLFEDEDVNLDDVNAVFDDPEEQLTEEQHGHDDMSPLALNAFDLIILSQGLNLGTMFDRGRDSMKYPTRFICQKPAKVLLSTMEVVAQSMGYKTHIRNYKMRVEGPSASKTSYFSVIMEIFEVAPTFFMVDIQKAAGETSEYLKFYKSFYSKLEDIIWKPSIDTGKSRITKNKNRCLAILLLNREVTMALSWYLSEAQYQLVILLILLIEEISFI 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23600914 23606908 - CmPI595203_08g011250.1 Cmu08g1125 422611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1125 484 ProSitePatterns Protein kinases ATP-binding region signature. 15 47 IPR017441 GO:0005524(InterPro)
Cmu08g1125 484 Gene3D Transferase(Phosphotransferase) domain 1 3 306 - -
Cmu08g1125 484 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 412 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cmu08g1125 484 FunFam Non-specific serine/threonine protein kinase 1 88 - -
Cmu08g1125 484 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1125 484 Gene3D Kinase associated domain 1, KA1 307 428 - -
Cmu08g1125 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g1125 484 SUPERFAMILY Protein kinase-like (PK-like) 6 263 IPR011009 -
Cmu08g1125 484 ProSiteProfiles NAF domain profile. 303 327 IPR018451 GO:0007165(InterPro)
Cmu08g1125 484 FunFam Non-specific serine/threonine protein kinase 2 303 - -
Cmu08g1125 484 CDD CIPK_C 309 424 - -
Cmu08g1125 484 Pfam NAF domain 305 363 IPR004041 GO:0007165(InterPro)
Cmu08g1125 484 FunFam Non-specific serine/threonine protein kinase 303 427 - -
Cmu08g1125 484 ProSiteProfiles Protein kinase domain profile. 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1125 484 SMART serkin_6 9 262 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1673 Cmu-Chr5:26723186 Cmu08g1125 Cmu-Chr8:23600914 9.00E-106 dispersed
Cmu08g1125 Cmu-Chr8:23600914 Cmu10g2059 Cmu-Chr10:26455886 1.30E-97 dispersed
Cmu11g0221 Cmu-Chr11:2682555 Cmu08g1125 Cmu-Chr8:23600914 4.90E-13 dispersed
Cmu06g1179 Cmu-Chr6:22677409 Cmu08g1125 Cmu-Chr8:23600914 6.70E-171 transposed
Cmu01g1805 Cmu-Chr1:31740645 Cmu08g1125 Cmu-Chr8:23600914 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75731 PF00069 Pkinase 3.30E-71 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1125 - - - 0.0