Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1150 ATGGAAGCTCCTGAATATTTCCAGATCAATGGCTACTGTTCTCAATTCGCCACCCACTCCTCCTCCGACAACGACTCCGCCACCGCCACCGCCACAGCCACTGCCGCCGGACCGGAGCATTTCATCGTGGAGGAGCTTCTCGATTTCTCCAACGATGACGACGCCGTTATTGGTGACGGTGGAGGATTGTTTTACAATAATAATAACAATGGGAATAATAATTCAACGGAATGTTCCGCCGTTACGGTGATTGAGAGTTGCAATTCGTCGTCGTTTTTGGAAGATATTAGTGGCTCTAATTTAACCGACGCCCATTTCTCCAGCGAACTCTGCGTTCCGTACGACGATTTAGCTGAGTTGGAATGGCTTTCACATTTCGTAGAGGAATCATTTTCCAGCGAGGACATGCAAAAGTTGGAATTAATCTCCGGAGTCAAAGTCAAAGAACCCGCCCAATCCCCACAACCCACCGTCTCTCACGGCCGAAAAGCCGCCGCAATTTTCAAACCGGACATCGTTTCCGTTCCGGCCAAAGCCCGTAGCAAACGCTCACGCGCCGTCCCATCCAATTGGAACAACTCCCGCCTCCTTCCTCTTTCTCCCACCACCGAACCCGAAATTACCACCACCGCGGGACCACCGCACCCCATCAAAAAACCCCCTCCCAAGGCGGCGACAGCCAAGAAGAAGGACAGCCCGGAGGTCGGAGTGTCCTCCGGCGAGGGGCGAAAGTGCATGCACTGCGCCACCGACAAGACGCCGCAGTGGCGGACCGGCCCAATGGGCCCGAAAACGCTGTGTAATGCTTGCGGCGTTCGGTACAAATCCGGCCGCCTGGTGCCGGAGTACCGCCCCGCCGCTAGCCCCACCTTCGTTTTAACCAAACACTCCAATTCTCACCGGAAAGTTTTGGAGCTCCGGCGGCAGAAAGAGCTTCTTAGAGCCCAACAACAGCAACAACAACATTTGCTTTTGGATCATCATCAGGATATGATCTTTGATGCATCCAACGGTGATGATTATCTCATTCATCAACATGTGGGCCCCGATTTCCGGCAGCTGATCTGA 1068 53.56 MEAPEYFQINGYCSQFATHSSSDNDSATATATATAAGPEHFIVEELLDFSNDDDAVIGDGGGLFYNNNNNGNNNSTECSAVTVIESCNSSSFLEDISGSNLTDAHFSSELCVPYDDLAELEWLSHFVEESFSSEDMQKLELISGVKVKEPAQSPQPTVSHGRKAAAIFKPDIVSVPAKARSKRSRAVPSNWNNSRLLPLSPTTEPEITTTAGPPHPIKKPPPKAATAKKKDSPEVGVSSGEGRKCMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKELLRAQQQQQQHLLLDHHQDMIFDASNGDDYLIHQHVGPDFRQLI 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23900810 23902626 - CmPI595203_08g011500.1 Cmu08g1150 422636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1150 355 MobiDBLite consensus disorder prediction 185 209 - -
Cmu08g1150 355 Gene3D - 238 289 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cmu08g1150 355 PIRSF Txn_fac_GATA_plant 22 334 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cmu08g1150 355 PANTHER GATA TRANSCRIPTION FACTOR 40 311 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cmu08g1150 355 SMART GATA_3 239 289 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1150 355 MobiDBLite consensus disorder prediction 178 243 - -
Cmu08g1150 355 Pfam GATA zinc finger 245 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1150 355 FunFam GATA transcription factor 237 322 - -
Cmu08g1150 355 ProSitePatterns GATA-type zinc finger domain. 245 270 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1150 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 303 - -
Cmu08g1150 355 ProSiteProfiles GATA-type zinc finger domain profile. 239 275 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu08g1150 355 CDD ZnF_GATA 244 291 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1150 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1150 Cmu-Chr8:23900810 Cmu09g0008 Cmu-Chr9:377878 7.80E-68 dispersed
Cmu11g1513 Cmu-Chr11:27448817 Cmu08g1150 Cmu-Chr8:23900810 1.40E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1150 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.6e-69 257.7
Cmu11g1513 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 8.0e-67 251.1
Cmu01g1945 . 107 283 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.4e-42 167.5
Cmu10g1068 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.7 4.2e-139 491.9
Cmu09g1250 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.7 1.4e-134 476.9
Cmu10g1068 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.9 1.8e-120 429.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002406 3 2 1 1 0 1 2 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6690 PF00320 GATA 1.80E-15 CL0167 Cmu TF