Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1161 ATGAGCACTAAACAAATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA 666 44.29 MSTKQMSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24030935 24031600 - CmPI595203_08g011610.1 Cmu08g1161 422647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1161 221 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Cmu08g1161 221 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1161 221 MobiDBLite consensus disorder prediction 1 43 - -
Cmu08g1161 221 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677(InterPro)
Cmu08g1161 221 SMART rav1_2 41 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1161 221 CDD AP2 42 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1161 221 Pfam AP2 domain 40 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1161 221 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 160 IPR051032 -
Cmu08g1161 221 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1161 221 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1161 221 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1161 221 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1305 Cmu-Chr7:28332352 Cmu08g1161 Cmu-Chr8:24030935 3.30E-39 dispersed
Cmu08g1161 Cmu-Chr8:24030935 Cmu11g0216 Cmu-Chr11:2628146 1.90E-40 dispersed
Cmu01g1833 Cmu-Chr1:31976975 Cmu08g1161 Cmu-Chr8:24030935 2.50E-16 wgd
Cmu11g1516 Cmu-Chr11:27478290 Cmu08g1161 Cmu-Chr8:24030935 1.20E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6691 PF00847 AP2 5.30E-14 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1161 K09286 - csv:101206242 340.117