Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1183 ATGAAGCGTAGCGCCTCCGAGTTGGCTCTTGAAGAGTTCCTCAAAAAAGCCGCCATCATCTCTCCCGACGACGACGTTATCGACCCCGACGACGAGGACGTTTTCAAAATCGAACAACAACAAATCATCAGAAGCCCAAAAAGAGGCAGAAACTTTCAGGATTCCGCCGATGCCACCTGCTTCTTCGGCGATATTGATTTCAGCTGTTTCCTCGTCAAAAATAATCGGGAGATAATGGACGCAATTGTTAACTGTGGAGGTGGGCTGGCGGAGGCTCCTTTATGGTCACAGAATCTCACTCCTAAGCATTCAAGCTTTTCAGCCACTATAGATTCCCAGTCTTCTATTGTGAGCAGCCCAACATCAGCCAGTAATTTGATGGGCAGAGAGCACCAAAGAGGTAACAATAGTGGGTCCTCTGAAGATCAATCTGATGATGAAATTGAAGCTGGCTCTTGTGAACAAAGCACTGACCCTCTTGCTTTGAAGAGAATCAGAAGAATGATCTCTAACAGGGACTCTGCTAGAAGGTCAAGAAGAAGAAAACAAGCTCATTTGGCTGAACTCGAGAACCAGGTGAAACAATTGAAAGGAGAAAATGAAACCTTGTTCAACCAACTTTTAGATGCTAGTCAACAATATCGTGATGCCAATACGAACAACCGTGTGCTTAAATCAGACGTAGACGCATTGAGAGCTAAGGTGAAGTTGGCGGAAGATACACTTGCTAGAGGCTCAATGACCTGTAGCTTGAATCAGCTGCTGCAGAGTCATTTGAGCACACCACAGCCACTCACGGCACTCAGACGAATGTCAAATGTCGCACCGCCGCTCGGTTTACCTGGAGACGAAGTTTCTTATTCCTGCGTGACAATGTCGGGGCAGAACCCGACCGTGGGGCTCCCGAACTCAGATATGCATATGAAAACAGGAATGGGTAGTGAGGCTGTTAGCTGTGTTTCAGGGATTTGGCCTAGAAATTAG 984 46.85 MKRSASELALEEFLKKAAIISPDDDVIDPDDEDVFKIEQQQIIRSPKRGRNFQDSADATCFFGDIDFSCFLVKNNREIMDAIVNCGGGLAEAPLWSQNLTPKHSSFSATIDSQSSIVSSPTSASNLMGREHQRGNNSGSSEDQSDDEIEAGSCEQSTDPLALKRIRRMISNRDSARRSRRRKQAHLAELENQVKQLKGENETLFNQLLDASQQYRDANTNNRVLKSDVDALRAKVKLAEDTLARGSMTCSLNQLLQSHLSTPQPLTALRRMSNVAPPLGLPGDEVSYSCVTMSGQNPTVGLPNSDMHMKTGMGSEAVSCVSGIWPRN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24265608 24269194 - CmPI595203_08g011830.1 Cmu08g1183 422669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1183 327 MobiDBLite consensus disorder prediction 106 141 - -
Cmu08g1183 327 Pfam bZIP transcription factor 161 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 Coils Coil 172 241 - -
Cmu08g1183 327 SUPERFAMILY Leucine zipper domain 163 212 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 SMART brlzneu 159 223 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 MobiDBLite consensus disorder prediction 106 155 - -
Cmu08g1183 327 FunFam BZIP transcription factor 161 212 - -
Cmu08g1183 327 CDD bZIP_plant_GBF1 181 215 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 Gene3D - 162 218 - -
Cmu08g1183 327 PANTHER BZIP TRANSCRIPTION FACTOR RISBZ3-RELATED 1 325 IPR044168 GO:0003700(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1183 K25784 - - csv:101210908 530.791
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1183 Cmu-Chr8:24265608 Cmu09g0711 Cmu-Chr9:6687968 1.20E-14 dispersed
Cmu08g1183 Cmu-Chr8:24265608 Cmu02g1652 Cmu-Chr2:30372385 2.30E-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1183 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.0e-51 199.1
Cmu10g0976 . 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.4e-105 379.4
Cmu09g1108 . 7 350 bZIP Transcription Factor Family AT2G35530 61.7 2.5e-102 369.4
Cmu07g0562 . 4 343 bZIP Transcription Factor Family AT2G40620 56.8 5.0e-86 315.1
Cmu02g1901 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.5e-69 259.6
Cmu02g0479 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.6e-38 155.2
Cmu02g0480 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.3e-37 152.9
Cmu02g1195 . 1 262 bZIP Transcription Factor Family AT4G35040 58.0 2.7e-65 245.7
Cmu02g0433 . 4 245 bZIP Transcription Factor Family AT4G35040 57.4 6.8e-53 204.5
Cmu08g1013 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cmu05g2738 . 19 349 bZIP Transcription Factor Family AT5G06950 76.7 1.9e-132 469.2
Cmu08g0473 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.4e-118 421.8
Cmu10g2370 . 175 602 bZIP Transcription Factor Family AT5G06950 57.0 2.6e-110 395.6
Cmu10g2471 . 220 513 bZIP Transcription Factor Family AT5G06950 60.8 2.7e-91 332.4
Cmu01g1177 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cmu02g2197 . 251 533 bZIP Transcription Factor Family AT5G06950 55.8 1.2e-83 307.0
Cmu07g0936 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.3e-74 276.2
Cmu11g0914 . 98 390 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cmu01g1177 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.5e-130 461.1
Cmu02g2197 . 249 542 bZIP Transcription Factor Family AT1G08320 70.0 9.4e-114 407.1
Cmu08g1013 . 46 335 bZIP Transcription Factor Family AT1G08320 62.8 3.3e-98 355.5
Cmu10g2471 . 197 513 bZIP Transcription Factor Family AT1G08320 58.4 1.3e-94 343.6
Cmu05g2738 . 62 349 bZIP Transcription Factor Family AT1G08320 61.5 4.9e-94 341.7
Cmu08g0473 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.3e-90 327.8
Cmu02g1195 . 1 261 bZIP Transcription Factor Family AT2G16770 60.3 1.8e-66 249.6
Cmu02g0433 . 2 245 bZIP Transcription Factor Family AT2G16770 56.7 2.8e-56 215.7
Cmu08g1013 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 3.1e-129 458.4
Cmu05g2738 . 39 349 bZIP Transcription Factor Family AT5G06960 74.6 2.2e-119 425.6
Cmu08g0473 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.3e-106 380.9
Cmu10g2370 . 196 602 bZIP Transcription Factor Family AT5G06960 54.2 6.3e-98 354.4
Cmu10g2471 . 206 513 bZIP Transcription Factor Family AT5G06960 59.8 9.1e-89 323.9
Cmu01g1177 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.7e-83 304.7
Cmu02g2197 . 251 533 bZIP Transcription Factor Family AT5G06960 54.8 6.3e-82 301.2
Cmu07g0936 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.0e-72 269.6
Cmu02g0480 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cmu02g0479 . 1 517 bZIP Transcription Factor Family AT4G38900 59.7 9.0e-132 467.6
Cmu08g0640 . 96 280 bZIP Transcription Factor Family AT4G38900 55.2 1.5e-38 157.9
Cmu09g0925 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 1.3e-37 154.8
Cmu07g0562 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.4e-37 152.1
Cmu05g0799 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cmu02g0480 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cmu02g0479 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.1e-99 360.9
Cmu09g0925 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 4.2e-38 156.4
Cmu02g0225 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.8e-57 219.2
Cmu08g1536 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.3e-86 315.8
Cmu01g1870 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cmu08g1013 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cmu05g2738 . 19 349 bZIP Transcription Factor Family AT3G12250 76.1 6.0e-131 464.2
Cmu08g0473 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.8e-117 418.3
Cmu10g2370 . 175 602 bZIP Transcription Factor Family AT3G12250 57.4 3.4e-110 395.2
Cmu10g2471 . 220 513 bZIP Transcription Factor Family AT3G12250 60.1 3.0e-90 328.9
Cmu01g1177 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cmu02g2197 . 251 533 bZIP Transcription Factor Family AT3G12250 56.4 4.2e-84 308.5
Cmu07g0936 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cmu11g0914 . 89 390 bZIP Transcription Factor Family AT3G12250 50.6 3.5e-70 262.3
Cmu08g0473 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.5e-144 507.3
Cmu08g1013 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 2.2e-115 412.9
Cmu05g2738 . 16 349 bZIP Transcription Factor Family AT1G68640 64.4 2.8e-110 396.0
Cmu10g2370 . 173 602 bZIP Transcription Factor Family AT1G68640 51.5 9.8e-100 360.9
Cmu10g2471 . 208 513 bZIP Transcription Factor Family AT1G68640 55.8 2.5e-87 319.7
Cmu01g1177 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cmu02g2197 . 229 533 bZIP Transcription Factor Family AT1G68640 53.0 3.0e-80 296.2
Cmu09g0925 . 12 293 bZIP Transcription Factor Family AT1G43700 52.5 3.3e-63 239.2
Cmu08g0640 . 9 319 bZIP Transcription Factor Family AT1G43700 52.5 6.1e-62 235.0
Cmu05g0121 . 205 610 bZIP Transcription Factor Family AT2G46270 50.9 6.2e-81 298.1
Cmu05g0799 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cmu05g0802 . 43 358 bZIP Transcription Factor Family AT2G31370 67.4 2.2e-103 372.9
Cmu07g0562 . 25 251 bZIP Transcription Factor Family AT2G31370 50.6 7.7e-48 188.3
Cmu08g0801 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.3e-71 264.6
Cmu10g0976 . 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.0e-97 354.0
Cmu09g1108 . 7 350 bZIP Transcription Factor Family AT1G32150 61.7 1.1e-94 344.0
Cmu05g0799 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.4e-124 442.6
Cmu05g0802 . 1 357 bZIP Transcription Factor Family AT1G06070 68.5 3.0e-119 425.6
Cmu08g0640 . 146 294 bZIP Transcription Factor Family AT1G06070 62.3 2.5e-41 166.8
Cmu09g0925 . 138 292 bZIP Transcription Factor Family AT1G06070 63.1 5.7e-41 165.6
Cmu02g0480 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 5.9e-38 155.6
Cmu02g0479 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cmu08g1536 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.3e-86 315.8
Cmu10g0976 . 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.4e-105 379.4
Cmu09g1108 . 7 350 bZIP Transcription Factor Family AT2G35530 61.7 2.5e-102 369.4
Cmu07g0562 . 4 343 bZIP Transcription Factor Family AT2G40620 56.8 5.0e-86 315.1
Cmu02g1901 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.5e-69 259.6
Cmu02g0479 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.6e-38 155.2
Cmu02g0480 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.3e-37 152.9
Cmu02g1195 . 1 262 bZIP Transcription Factor Family AT4G35040 58.0 2.7e-65 245.7
Cmu02g0433 . 4 245 bZIP Transcription Factor Family AT4G35040 57.4 6.8e-53 204.5
Cmu08g1013 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.2e-139 493.0
Cmu05g2738 . 19 349 bZIP Transcription Factor Family AT5G06950 76.7 1.9e-132 469.2
Cmu08g0473 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.4e-118 421.8
Cmu10g2370 . 175 602 bZIP Transcription Factor Family AT5G06950 57.0 2.6e-110 395.6
Cmu10g2471 . 220 513 bZIP Transcription Factor Family AT5G06950 60.8 2.7e-91 332.4
Cmu01g1177 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cmu02g2197 . 251 533 bZIP Transcription Factor Family AT5G06950 55.8 1.2e-83 307.0
Cmu07g0936 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.3e-74 276.2
Cmu11g0914 . 98 390 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cmu01g1177 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.5e-130 461.1
Cmu02g2197 . 249 542 bZIP Transcription Factor Family AT1G08320 70.0 9.4e-114 407.1
Cmu08g1013 . 46 335 bZIP Transcription Factor Family AT1G08320 62.8 3.3e-98 355.5
Cmu10g2471 . 197 513 bZIP Transcription Factor Family AT1G08320 58.4 1.3e-94 343.6
Cmu05g2738 . 62 349 bZIP Transcription Factor Family AT1G08320 61.5 4.9e-94 341.7
Cmu08g0473 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.3e-90 327.8
Cmu02g1195 . 1 261 bZIP Transcription Factor Family AT2G16770 60.3 1.8e-66 249.6
Cmu02g0433 . 2 245 bZIP Transcription Factor Family AT2G16770 56.7 2.8e-56 215.7
Cmu08g1013 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 3.1e-129 458.4
Cmu05g2738 . 39 349 bZIP Transcription Factor Family AT5G06960 74.6 2.2e-119 425.6
Cmu08g0473 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.3e-106 380.9
Cmu10g2370 . 196 602 bZIP Transcription Factor Family AT5G06960 54.2 6.3e-98 354.4
Cmu10g2471 . 206 513 bZIP Transcription Factor Family AT5G06960 59.8 9.1e-89 323.9
Cmu01g1177 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.7e-83 304.7
Cmu02g2197 . 251 533 bZIP Transcription Factor Family AT5G06960 54.8 6.3e-82 301.2
Cmu07g0936 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.0e-72 269.6
Cmu02g0480 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cmu02g0479 . 1 517 bZIP Transcription Factor Family AT4G38900 59.7 9.0e-132 467.6
Cmu08g0640 . 96 280 bZIP Transcription Factor Family AT4G38900 55.2 1.5e-38 157.9
Cmu09g0925 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 1.3e-37 154.8
Cmu07g0562 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.4e-37 152.1
Cmu05g0799 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cmu02g0480 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cmu02g0479 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.1e-99 360.9
Cmu09g0925 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 4.2e-38 156.4
Cmu02g0225 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.8e-57 219.2
Cmu01g1870 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cmu08g1013 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.2e-139 493.0
Cmu05g2738 . 19 349 bZIP Transcription Factor Family AT3G12250 76.1 6.0e-131 464.2
Cmu08g0473 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.8e-117 418.3
Cmu10g2370 . 175 602 bZIP Transcription Factor Family AT3G12250 57.4 3.4e-110 395.2
Cmu10g2471 . 220 513 bZIP Transcription Factor Family AT3G12250 60.1 3.0e-90 328.9
Cmu01g1177 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cmu02g2197 . 251 533 bZIP Transcription Factor Family AT3G12250 56.4 4.2e-84 308.5
Cmu07g0936 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cmu11g0914 . 89 390 bZIP Transcription Factor Family AT3G12250 50.6 3.5e-70 262.3
Cmu08g0473 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.5e-144 507.3
Cmu08g1013 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 2.2e-115 412.9
Cmu05g2738 . 16 349 bZIP Transcription Factor Family AT1G68640 64.4 2.8e-110 396.0
Cmu10g2370 . 173 602 bZIP Transcription Factor Family AT1G68640 51.5 9.8e-100 360.9
Cmu10g2471 . 208 513 bZIP Transcription Factor Family AT1G68640 55.8 2.5e-87 319.7
Cmu01g1177 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cmu02g2197 . 229 533 bZIP Transcription Factor Family AT1G68640 53.0 3.0e-80 296.2
Cmu09g0925 . 12 293 bZIP Transcription Factor Family AT1G43700 52.5 3.3e-63 239.2
Cmu08g0640 . 9 319 bZIP Transcription Factor Family AT1G43700 52.5 6.1e-62 235.0
Cmu05g0121 . 205 610 bZIP Transcription Factor Family AT2G46270 50.9 6.2e-81 298.1
Cmu05g0799 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cmu05g0802 . 43 358 bZIP Transcription Factor Family AT2G31370 67.4 2.2e-103 372.9
Cmu07g0562 . 25 251 bZIP Transcription Factor Family AT2G31370 50.6 7.7e-48 188.3
Cmu08g0801 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.3e-71 264.6
Cmu10g0976 . 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.0e-97 354.0
Cmu09g1108 . 7 350 bZIP Transcription Factor Family AT1G32150 61.7 1.1e-94 344.0
Cmu05g0799 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.4e-124 442.6
Cmu05g0802 . 1 357 bZIP Transcription Factor Family AT1G06070 68.5 3.0e-119 425.6
Cmu08g0640 . 146 294 bZIP Transcription Factor Family AT1G06070 62.3 2.5e-41 166.8
Cmu09g0925 . 138 292 bZIP Transcription Factor Family AT1G06070 63.1 5.7e-41 165.6
Cmu02g0480 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 5.9e-38 155.6
Cmu02g0479 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cmu08g1183 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.0e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006028 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6694 PF00170 bZIP_1 1.90E-14 CL0018 Cmu TF