Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1183 ATGAAGCGTAGCGCCTCCGAGTTGGCTCTTGAAGAGTTCCTCAAAAAAGCCGCCATCATCTCTCCCGACGACGACGTTATCGACCCCGACGACGAGGACGTTTTCAAAATCGAACAACAACAAATCATCAGAAGCCCAAAAAGAGGCAGAAACTTTCAGGATTCCGCCGATGCCACCTGCTTCTTCGGCGATATTGATTTCAGCTGTTTCCTCGTCAAAAATAATCGGGAGATAATGGACGCAATTGTTAACTGTGGAGGTGGGCTGGCGGAGGCTCCTTTATGGTCACAGAATCTCACTCCTAAGCATTCAAGCTTTTCAGCCACTATAGATTCCCAGTCTTCTATTGTGAGCAGCCCAACATCAGCCAGTAATTTGATGGGCAGAGAGCACCAAAGAGGTAACAATAGTGGGTCCTCTGAAGATCAATCTGATGATGAAATTGAAGCTGGCTCTTGTGAACAAAGCACTGACCCTCTTGCTTTGAAGAGAATCAGAAGAATGATCTCTAACAGGGACTCTGCTAGAAGGTCAAGAAGAAGAAAACAAGCTCATTTGGCTGAACTCGAGAACCAGGTGAAACAATTGAAAGGAGAAAATGAAACCTTGTTCAACCAACTTTTAGATGCTAGTCAACAATATCGTGATGCCAATACGAACAACCGTGTGCTTAAATCAGACGTAGACGCATTGAGAGCTAAGGTGAAGTTGGCGGAAGATACACTTGCTAGAGGCTCAATGACCTGTAGCTTGAATCAGCTGCTGCAGAGTCATTTGAGCACACCACAGCCACTCACGGCACTCAGACGAATGTCAAATGTCGCACCGCCGCTCGGTTTACCTGGAGACGAAGTTTCTTATTCCTGCGTGACAATGTCGGGGCAGAACCCGACCGTGGGGCTCCCGAACTCAGATATGCATATGAAAACAGGAATGGGTAGTGAGGCTGTTAGCTGTGTTTCAGGGATTTGGCCTAGAAATTAG 984 46.85 MKRSASELALEEFLKKAAIISPDDDVIDPDDEDVFKIEQQQIIRSPKRGRNFQDSADATCFFGDIDFSCFLVKNNREIMDAIVNCGGGLAEAPLWSQNLTPKHSSFSATIDSQSSIVSSPTSASNLMGREHQRGNNSGSSEDQSDDEIEAGSCEQSTDPLALKRIRRMISNRDSARRSRRRKQAHLAELENQVKQLKGENETLFNQLLDASQQYRDANTNNRVLKSDVDALRAKVKLAEDTLARGSMTCSLNQLLQSHLSTPQPLTALRRMSNVAPPLGLPGDEVSYSCVTMSGQNPTVGLPNSDMHMKTGMGSEAVSCVSGIWPRN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24265608 24269194 - CmPI595203_08g011830.1 Cmu08g1183 422669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1183 327 MobiDBLite consensus disorder prediction 106 141 - -
Cmu08g1183 327 Pfam bZIP transcription factor 161 207 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 Coils Coil 172 241 - -
Cmu08g1183 327 SUPERFAMILY Leucine zipper domain 163 212 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 SMART brlzneu 159 223 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 MobiDBLite consensus disorder prediction 106 155 - -
Cmu08g1183 327 FunFam BZIP transcription factor 161 212 - -
Cmu08g1183 327 CDD bZIP_plant_GBF1 181 215 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 166 181 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 161 224 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1183 327 Gene3D - 162 218 - -
Cmu08g1183 327 PANTHER BZIP TRANSCRIPTION FACTOR RISBZ3-RELATED 1 325 IPR044168 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1183 Cmu-Chr8:24265608 Cmu09g0711 Cmu-Chr9:6687968 1.20E-14 dispersed
Cmu08g1183 Cmu-Chr8:24265608 Cmu02g1652 Cmu-Chr2:30372385 2.30E-26 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6694 PF00170 bZIP_1 1.90E-14 CL0018 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1183 K25784 - csv:101210908 530.791