Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1197 ATGACGGCACCGGTGTCAGTTGATGGGAAAGTGAAGAAGAATCTTGAGAATTTGGTGTCTGCTACTAAGTCTTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTAGGGTTTGCGTTGCAGAAAGCTGGGCCGAGATTTGAGGAGATTAGGCAAAGATTGCCAACTTTAGAAGCGGCGGTTCGGCCTATCCGTGCTGATAAGGAAGCCCTTGCCGCCGTCGGTGGCCATATACATCGGGCTGTTGGCCCTGCGGCGGCGGTGCTTAAGGTTTTTGATGCTGTTCATGGTCTTGAAAAGTCTCTGTTATCGGACCCGCGGAATGATCTCCCTGGATATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTAGGAGATAACTGTGGACTGGCAATCCAGTGGTTGGAGGACATTGTTGAGTATTTAGAAGATAATACTGTTGCTGATGAGAAATATCTAGCGAGTTTGAAGAATTCGTTGAAAAATCTTAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTCGAGAACGAGTTTAGGCGGCTTTTAACAGAGCATAGTGTACCCCTTCCCATGTCTTCTTCGGCGTCTCTCGTTGAACAAGCTTGCATTGCTCCATCTCCATTGCCTGTGACTGTAATTCAGAAATTGCAAGCCATTCTTGGGAGATTGATTACTAATAAACGACTCGAGAGATGCATATCGATTTATGTTGAAGTTCGTAGTTCTAATGTTCGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGATGTGCAGAGCATTGAAGGGTACATTGCAAAATGGGGAAAGCATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCTGAGTTCAAGCTTTGTAATGACGTTTTCGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCAACTCAAGCAGGTATACTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAAAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTGCATCCTTGAACAAACTGAGACTAGACTTCAATAGGCTTTTTGGCGGGGCGGCCTGTTTGGAAATTCAAAACTTGACTAGGGATCTCATTAAGAGGGTTATCGATGGTACAGCCGAGATTTTCTGGGAGCTTCTAGTTCAGGTGGAGCTCCAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAACTGCTCAGTGATGATTATCGGCCGATCCTGACCCAAGCCCTCGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTGTCAATGAGGTAACAAACCTTGTTAAAGCCATTGAGCAGAATCTGGAGACTTGGATCAAGGCTTATGAAGATTCTACCTTGTCAAATTTTTTCGCTATGAATAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGTCGGAGAACTAATGGGAGATAAACTAAAGGAACACGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGCCATCTAAGCAGGGAGGGTTTGATTATGTTTTCAGGTGGGAGAGCTACTGCTCGTGATCTCGTCAAGAAACGTCTAAAGACATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAACCTGGGTTATATTTGACAAAGAACTGAGGGAGAAGACATGTCAACTTATAGTTCAAACCATCGTGCCCGTTTATCGCAGTTACATGCAGAATTACGGCCCCCTGGTCGAGCAAGACGCGAGTTCCAGTAAGTATGCGAAGTACACCGTGCAGAATCTGGAGAAAATGTTGCTGTCCCTATATCAGCCAAAGCCACTCAGGTACAGTAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAATGGATCATCGTCGTTCCAACTCCATGGTTTTGTAA 2049 43.73 MTAPVSVDGKVKKNLENLVSATKSLKASLEKSRALGFALQKAGPRFEEIRQRLPTLEAAVRPIRADKEALAAVGGHIHRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADEKYLASLKNSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSASLVEQACIAPSPLPVTVIQKLQAILGRLITNKRLERCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGTAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLVNEVTNLVKAIEQNLETWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMGDKLKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSTWVIFDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLYQPKPLRYSSLKVRQTSGKFSNGAMDHRRSNSMVL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24386472 24388520 + CmPI595203_08g011970.1 Cmu08g1197 422683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1197 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 25 649 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cmu08g1197 682 Coils Coil 12 32 - -
Cmu08g1197 682 FunFam Exocyst subunit Exo70 family protein 137 654 - -
Cmu08g1197 682 Coils Coil 155 175 - -
Cmu08g1197 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Cmu08g1197 682 Pfam Exo70 exocyst complex subunit C-terminal 290 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cmu08g1197 682 Pfam Exocyst complex component Exo70 N-terminal 82 199 - -
Cmu08g1197 682 Gene3D Exocyst complex component Exo70 138 654 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1197 K07195 - - csv:101207478 1278.08
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1605 Cmu-Chr7:31202037 Cmu08g1197 Cmu-Chr8:24386472 2.10E-34 dispersed
Cmu08g1197 Cmu-Chr8:24386472 Cmu09g0148 Cmu-Chr9:1649930 2.10E-178 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g2244 . 12 653 EXO70 exocyst subunit family AT5G03540 76.3 1.3e-286 982.2
Cmu01g1457 . 1 638 EXO70 exocyst subunit family AT5G03540 71.1 5.8e-266 913.7
Cmu01g1457 . 1 638 EXO70 exocyst subunit family AT5G52340 80.4 1.7e-299 1025.0
Cmu05g2244 . 14 653 EXO70 exocyst subunit family AT5G52340 74.7 6.0e-273 936.8
Cmu01g1457 . 145 631 EXO70 exocyst subunit family AT5G52350 63.9 1.3e-176 616.7
Cmu05g2244 . 149 653 EXO70 exocyst subunit family AT5G52350 59.5 7.8e-166 580.9
Cmu03g0672 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 3.7e-246 847.8
Cmu03g0672 . 1 622 EXO70 exocyst subunit family AT1G07000 52.4 1.0e-173 607.1
Cmu07g1515 . 60 673 EXO70 exocyst subunit family AT5G13150 53.5 4.6e-175 611.7
Cmu01g0835 . 115 726 EXO70 exocyst subunit family AT5G13990 54.5 6.0e-189 657.9
Cmu07g1430 . 9 609 EXO70 exocyst subunit family AT1G72470 65.2 4.7e-217 751.1
Cmu07g1430 . 9 607 EXO70 exocyst subunit family AT1G54090 62.0 1.4e-208 723.0
Cmu07g1430 . 9 608 EXO70 exocyst subunit family AT3G14090 64.4 8.5e-219 756.9
Cmu03g1956 . 27 664 EXO70 exocyst subunit family AT5G50380 61.5 8.7e-225 776.9
Cmu03g0976 . 18 630 EXO70 exocyst subunit family AT5G50380 60.9 1.9e-211 732.6
Cmu08g1197 . 11 682 EXO70 exocyst subunit family AT4G31540 73.6 1.4e-294 1008.8
Cmu10g2801 . 35 630 EXO70 exocyst subunit family AT3G09520 55.9 1.9e-178 622.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005903 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39