Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1223 ATGGCTGTCAAAACAGCTCAATCATTTAGAGATCGGACGCTGGAATTCCAGAATATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTGGCACGGGACCAACTGGACCAAGTGCTGTTTCAAAATCAGAAGAGCAGCGCTCTTCTGTGGCTCTACAGTCTGAATTCAATAAGAGGGCTTCCAAGATTGGGTTAGGGATACACCAGACATCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATCCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACATTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTTCTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACAAAAGAATTTAAAGAAGTTCTGACAATGCGAACAGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACAAATCCTTTTGTTCGCCAGCGCCCATTAGCATCTAGGTCAGCTGCTGGTGCCCCAAGTGCACCCCCTCCTCCATGGGCCAAGGCGTCTACATCTTTTTCCAAAACATCTCCTGGGAAGCAGGTGGATGGGGAGGGTCAACCATTATTGCAGCAGCAACAGCAACAGCAACAGATGGTTCCATTACAAGATACTTACATGCAGAGCAGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAATCAGCTGGCAACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGCTTCATTAAGATGAAAATTTTGGATATTCTTGCTACTTATTCTTATTTTATCTCAGTGATTGATAAAACTGGGGCAGAACAGAGATTAGGAAGGAAAAATAGATCAGGTTGCATGCTCAGGCTGGACAATAGGTGTGCATGGACGCAACAGCCTGTGGAACAGAACATGTCACTGATCGATGAGAACATGGACGATACTCTCGCAAATGTGGAGGGAGCGCAGGGAGCTTTGCTCAAATATCTAAGCAGTATATCATCAAACAGACGGAAGATCTGGATTCTAGTCAAGTATAATGTTGATAATGTGTCAGTTCGTGTTTATGCCTTCAACTTCTCTTCTAATTTTGGGAACGCATCGCTGAAGAACTCAAACGCATCAAATTACTACAGTTTGAAGAGCACTCTTTATCGGTCTCCAGAAGGATGGAATTGCCTTAAATGA 1299 42.26 MAVKTAQSFRDRTLEFQNITERLKKSFSSGTGPTGPSAVSKSEEQRSSVALQSEFNKRASKIGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTSSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGAPSAPPPPWAKASTSFSKTSPGKQVDGEGQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAISFIKMKILDILATYSYFISVIDKTGAEQRLGRKNRSGCMLRLDNRCAWTQQPVEQNMSLIDENMDDTLANVEGAQGALLKYLSSISSNRRKIWILVKYNVDNVSVRVYAFNFSSNFGNASLKNSNASNYYSLKSTLYRSPEGWNCLK 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24616114 24620961 + CmPI595203_08g012230.1 Cmu08g1223 422709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1223 432 MobiDBLite consensus disorder prediction 170 190 - -
Cmu08g1223 432 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 283 IPR000727 -
Cmu08g1223 432 SUPERFAMILY t-snare proteins 52 283 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cmu08g1223 432 PANTHER SYNTAXIN 54 380 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cmu08g1223 432 MobiDBLite consensus disorder prediction 24 46 - -
Cmu08g1223 432 MobiDBLite consensus disorder prediction 209 242 - -
Cmu08g1223 432 MobiDBLite consensus disorder prediction 168 242 - -
Cmu08g1223 432 Pfam SNARE domain 345 381 IPR000727 -
Cmu08g1223 432 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
Cmu08g1223 432 CDD SNARE_syntaxin5 249 382 - -
Cmu08g1223 432 Gene3D - 50 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0454 Cmu-Chr7:4808274 Cmu08g1223 Cmu-Chr8:24616114 3.00E-61 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1223 K08490 - csv:101203633 498.049