Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1226 ATGGATGTTCCCTCAGTGGAACTAAATTGTGAAAGTGAAGGAGACTCTTACCCTTTATTAATGGCACGACCTGAAAATTCTAACAGCAGTGAGCATATCATTGACATAACTGGTACTGGTGATTCTGCCCCCTCTAGTTTGCCTCATGGTAGGAGTTCAAATGGCTTAAATTCATCGCAGCCTGAAGATAGACCTTCAAGTAGTACCCGAGTTCCCTTGTCTCAACCTTCAATTTCTTCTACTGGATCAAATTCTAGAAATTCCTCATTCATAAGAAGAGGAGATGCACGACGTCGTAGAAGTCCATTAAATTCTGGCTTATGGATATCTATTGAATTACTACTCACTATGAGCCAGATTATTGCAGCTATTATTGTCTTATCATTGTCAAAGAATGAAAAACCTCGTGCCCCTTTGTTTGCATGGATTGTGGGATATGCATCTGGATGTGGTGCGACCCTTCCTCTTCTCTATTGGCGTTATCGACACCGCAATCAGGCTTCAGAACAAGATCCTCTTCAATCCAGCCAGAATGCTTCTCGCATTAATGTTCCTGCTGGGCCATTCTCTCTTTCAGTTTCTAGGGCATCAGAAGGGGAAGAACTTCCACATCCTGCCCCATCTGCTAGAGGCAGTCAAGGGTCAGGAGTACTATCAGCAAGATTAAAAGTATTGGTGGAATATTTTAAGATGGGCCTGGATTGCTTCTTTGCTGTTTGGTTTGTGGTTGGTAACGTTTGGATCTTTGGAGGGCATTCATCAGCCTCTGAGGCTCCTAACTTGTACAGGCTATGTATAGTGTTTCTTACCTTCAGCTGTATTGGTTATGCCATGCCCTTCATTCTATGTGTAACCATCTGCTGTTGCCTACCTTGTATAATTTCCATCCTTGGGTTTAGAGAGGACTTGACACAGACCCGAGGAGCCACATCAGAATCTATTAATGCATTACCAACTTATAAGTTTAAGCTGAAGAAAAGTAGAAGTGGAGATGATAGAGAAAACAACTCCGGGGCTGGTGATGGAGGAGGGGTTGTGGCTGCTGGAACTGAAAAGGAACGAGTGATTTCTGGAGAAGATGCTGTCTGTTGCATCTGCTTGGCGAAATACGCTAACAACGATGAACTGAGAGAGTTGCCATGTGCACACTTTTTCCACAAGGACTGTGTAGATAAATGGTTGAAGATCAATGCCTTGTGCCCGCTTTGCAAAACCGAGGTTGGCGAGAGTATCATCAACTCTCTTGAGGGGACAAACAGACAACAACAGGGTGATTAG 1278 43.74 MDVPSVELNCESEGDSYPLLMARPENSNSSEHIIDITGTGDSAPSSLPHGRSSNGLNSSQPEDRPSSSTRVPLSQPSISSTGSNSRNSSFIRRGDARRRRSPLNSGLWISIELLLTMSQIIAAIIVLSLSKNEKPRAPLFAWIVGYASGCGATLPLLYWRYRHRNQASEQDPLQSSQNASRINVPAGPFSLSVSRASEGEELPHPAPSARGSQGSGVLSARLKVLVEYFKMGLDCFFAVWFVVGNVWIFGGHSSASEAPNLYRLCIVFLTFSCIGYAMPFILCVTICCCLPCIISILGFREDLTQTRGATSESINALPTYKFKLKKSRSGDDRENNSGAGDGGGVVAAGTEKERVISGEDAVCCICLAKYANNDELRELPCAHFFHKDCVDKWLKINALCPLCKTEVGESIINSLEGTNRQQQGD 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24631607 24634722 - CmPI595203_08g012260.1 Cmu08g1226 422712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1226 425 SMART ring_2 363 403 IPR001841 -
Cmu08g1226 425 ProSiteProfiles Zinc finger RING-type profile. 363 404 IPR001841 -
Cmu08g1226 425 SUPERFAMILY RING/U-box 355 410 - -
Cmu08g1226 425 MobiDBLite consensus disorder prediction 1 96 - -
Cmu08g1226 425 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 408 - -
Cmu08g1226 425 SMART ringv_2 362 404 IPR011016 GO:0008270(InterPro)
Cmu08g1226 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 411 IPR013083 -
Cmu08g1226 425 MobiDBLite consensus disorder prediction 22 90 - -
Cmu08g1226 425 FunFam E3 ubiquitin-protein ligase 346 412 - -
Cmu08g1226 425 Pfam Ring finger domain 363 404 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1226 Cmu-Chr8:24631607 Cmu09g2048 Cmu-Chr9:36545155 2.20E-45 dispersed
Cmu08g1226 Cmu-Chr8:24631607 Cmu01g1265 Cmu-Chr1:25235381 7.50E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1226 - - - 0.0