Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1228 ATGGCATGCGACTCGTTCAAAAAAACTCCATCTCCTTCCCGCTCCTTCTCCCCGCTCCTCCGCCCTGTTCCTCACCCGCTAGCTCCGTCGCCTATGCCCGCCGTCTCATTCCATTTTTATGCACTCAAAGCTATGGCTGACTGGCTGATCGGAGAAAATGTTGGAATGGAGCTTCCAGTGAATGCTAAGTGTAAAGTCATTTCGGTTTTGTTCAATAGCATAAAAATAGGCGGAACATGGTTCTGTGTCAACATGCACATATCTGAGCTCAATTCCTTTTCATATGGTTATAGCCGTGCATTTGCTTGTCCACACACAACAGCTCTGTTGAATATGATGAAAGAAAAGGTTGCTGTCAGAATCACGCGCTCCCAGTCTAATTCCTCAAGCAGACTAGGAGCTAATTCACCTTCATTGCAACTTTCACTCAAAGAATTGCGCAAACGTGGCCATACAGAAGACTCTGAACGAGCACAACTAGATGGAAGTAATGCTTCCACAACTATTACTGTTGGTGTTCGGCGCAAAAGAAGATCAGTGCTCAAGGATGTTACCAACATGTCCTGTGAGAGTAGTAATCTGGGGTGCTTGCATGCTTCTAAAGTTCAGGTGCAAGAGGTTTCACAGATGGAATCACTTGAAGATTCACCCGTTCAAAGGATGGCAGAATCACTAGGTACCTCTCCAGTGATGAGGTCAGACAAACAAGAGACAACACAGGCGAACAAGTTTCAGAGTGTCATAGGATGCAAAAATTGTGCGTTCCCCATGCCTTCAGGATCAAACGACCACCAAATGAAAGTTGAGGCTACGGTTTGTGAGAAATTAAACCATCTCGGTAGTTTGGATGCTATTTCAAACTCAGAAGATCCTCAAGCTTGCACCCTATATGCCAATAATATATATGATACTAATCGTGTTATAGAGCTCGATCAAAGGCCTTCTACTAATTATATGGAAAAGTTACAGAAATATATCACTCCAATCATGCGAGGGATTCTAATTGATTGGCTAGTGGAGGTTTCTGAAGAATATAAACTGATCTCTGACACACTTTACCTCACCGTGAATCTCATTGATCGGTTTCTCTCTCAAAGTTACATTGAAAGGCATAGATTACAACTTCTTGGTGTCACTTGCATGTTAATTGCCTCTAAATATGAAGAAGTCTGTGCACCATTTGTGGAAGAGTTTTGCAGCATCACAGACAACACCTATGCGAGAGAAGAGGTACTAAAAATGGAGGGTGAAGTTCTGAACGTGCTTAATTTTCAGCTCTCTGTTCCTACTACAAAAACATTTCTCAGGAGATTTGTGCAGGTAGCACAGGCTTCTTTCAAGGAAACTTGTGTCGAGTTCGAGCATTTAACAAATTATCTAGCAGAGTTGACTCTTGGAGAGTACAGCTTCCTCAGATTTCTGCCTTCAGCAGTAGCTGCATCAGTGGTGTTCTTAGCCAGATGGATTCTGCATCAACCAAATCAACCATGGAACCTGGCTTTAGAGCATTATACCAATTACAATGTCTCCAAGTTAAGAACTTCAGTACTTGCCTTGGAAGATCTAAGATTGAACTCCACAGGTTGCCCTTTAAAAGCCGTATTCCAGAAGTATAGACAACAGAAGTTTGGAAGTGTGGCAACTTTAACCTCCACAAAATCAGTTCTCTCAGCTTTCCCCAACCAGACAGATACCTGA 1698 42.82 MACDSFKKTPSPSRSFSPLLRPVPHPLAPSPMPAVSFHFYALKAMADWLIGENVGMELPVNAKCKVISVLFNSIKIGGTWFCVNMHISELNSFSYGYSRAFACPHTTALLNMMKEKVAVRITRSQSNSSSRLGANSPSLQLSLKELRKRGHTEDSERAQLDGSNASTTITVGVRRKRRSVLKDVTNMSCESSNLGCLHASKVQVQEVSQMESLEDSPVQRMAESLGTSPVMRSDKQETTQANKFQSVIGCKNCAFPMPSGSNDHQMKVEATVCEKLNHLGSLDAISNSEDPQACTLYANNIYDTNRVIELDQRPSTNYMEKLQKYITPIMRGILIDWLVEVSEEYKLISDTLYLTVNLIDRFLSQSYIERHRLQLLGVTCMLIASKYEEVCAPFVEEFCSITDNTYAREEVLKMEGEVLNVLNFQLSVPTTKTFLRRFVQVAQASFKETCVEFEHLTNYLAELTLGEYSFLRFLPSAVAASVVFLARWILHQPNQPWNLALEHYTNYNVSKLRTSVLALEDLRLNSTGCPLKAVFQKYRQQKFGSVATLTSTKSVLSAFPNQTDT 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24647123 24656680 - CmPI595203_08g012280.1 Cmu08g1228 422714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1228 565 SMART Cyclin_C_2 429 552 IPR004367 -
Cmu08g1228 565 Gene3D - 301 548 - -
Cmu08g1228 565 PANTHER CYCLINS 283 539 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu08g1228 565 ProSitePatterns Cyclins signature. 331 362 IPR048258 -
Cmu08g1228 565 Gene3D - 314 427 - -
Cmu08g1228 565 FunFam Mitotic cyclin 6 314 414 - -
Cmu08g1228 565 SMART cyclin_7 433 521 IPR013763 -
Cmu08g1228 565 SMART cyclin_7 336 420 IPR013763 -
Cmu08g1228 565 CDD CYCLIN_AtCycA-like_rpt2 429 543 - -
Cmu08g1228 565 Pfam Cyclin, N-terminal domain 301 427 IPR006671 -
Cmu08g1228 565 FunFam Cyclin A1 416 548 - -
Cmu08g1228 565 SUPERFAMILY Cyclin-like 428 553 IPR036915 -
Cmu08g1228 565 Pfam Cyclin, C-terminal domain 429 550 IPR004367 -
Cmu08g1228 565 CDD CYCLIN_AtCycA_like_rpt1 290 425 - -
Cmu08g1228 565 SUPERFAMILY Cyclin-like 289 426 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1228 Cmu-Chr8:24647123 Cmu08g1563 Cmu-Chr8:27421620 1.90E-68 dispersed
Cmu05g1751 Cmu-Chr5:27610905 Cmu08g1228 Cmu-Chr8:24647123 5.90E-111 wgd
Cmu08g1228 Cmu-Chr8:24647123 Cmu09g0226 Cmu-Chr9:2348197 8.20E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1228 K06627 - csv:101211578 770.0