Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1246 ATGTACGAGTTCCAGGTCCCACATTTAGCAATCCTGGTTCCGGTCTTCACTAAACCCCGAGCCAAGCGCTGGAAGATCTGTCCTCCACCGCACCCTCTCTCTCTCGAGAGGAAACGGAACCCTTTATCATCTCTCTGCCATATTCATCGGCCTCGAGTGATGGGGGCTCCGTTCGAGGGAATAGTAAAGGATTTGAAGGGAAGGGCGGCGTGCTATAAACAGGATTGGATAAGTGCACTATGTTCTGGCGTCAGGATTTTGGCTCCTACTATGTACATTTTCTTCGCCTCAGCTCTACCTGTTATTGCCTTTGGGGAGCAACTTAGTAGGGATACAGGTGGAAGATTGAGCACCGTGGAAACATTAGCCTCAACTGCGCTGTGTGGAATTATCCACTCAATCTTTGGGGGACAGCCTTTGTTGATTTTAGGAGTGGCAGAACCAACTGTTATAATGTACATTTACTTGTACAGTTTCTCCCAAGGCCGGCCAGAGTTAGGAGGCGATCTCTTTTTAGCTTGGGCTGGATGGGTGTGCATTTGGACAGGATTCTTCCTGATCCTCCTTGCAATCTTTAATGCTTGCACCGTCATCACCAAATTTACCAGAGTTGCGGGGGAATTATTTGGCATGCTTATTGCTGTTCTTTTCTTCCAAGAGGCAATAAAGGGATTGATAAGCGAATTCCAGATTCCCAAGTCAGAAAAGCCAGAGGTATTGGAGTACCAATTTGAGTGGTTGTATGCAAATGGGTTGCTTGCGGTAATTTTTTCAATGGGTCTACTCTTCACAGCCTTGAAAAGCAGACATGCAAGATCGTGGAAATATGGAACTGGCTGGTTCCGGAGTTTCATTGCGGACTATGGGGTTCCACTTATGGTTGTGTTCTGGACAGCATTGTCGTATGGAGTTCCCGGTGAAGTTCCAAATGGAGTTCCAAGGAGACTCTTTTGCCCATTACCTTGGGAACCAGCCTCATTGTACCACTGGACTGTAGTGAAGGACATGGGTAAGGTTCCATTGACTTACATCTTTGCTGCAACTCTGCCAGCCGTCATGATAGCAGGCCTATACTTTTTTGACCATAGTGTTGCATCGCAAATGGCGCAACAGAAAGAGTTTAATCTTCAAAATCCATCTGCATATCATTATGATGTCTTCTTGCTCGGGATTATGACTGTGATTTGTGGATTGCTTGGATTGCCTCCTTCTAATGGTGTCCTCCCACAGTCCCCAATGCACACCAAGAGTCTTGCAGTGCTTAAACGGCAGCTAATTCGAAGAAAAATGGTAAAGAGTGCAAAGGAATGTATCAAACAAAAAGCAAGCAACTCTGAAATTTATGGAAAGATGCAGGCTGTGTTCATTGAAATGGACGCATCTCCAACTCCTAAAGAGCTAGAAACCTTGACGAAGGCAGTAATGAATGCTGATGAAGGTGATCGAAAGGGAAAATTCGATGCTGAGAAAAATATAGATCCTTATTTGCCTGTTCGTGTGAATGAGCAAAGGATGAGCAACTTGCTGCAGTCTTTCCTTGTTGCTGTATTAATATTTGCTATCCCTATAATGAGAATGATACCTACTTCAGTTCTTTGGGGATACTTTGCTTACATGGCTGTTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATGTTGTTACTCTTCATTACACCCGGTCGGCGTTTCAAAGTCTTGGAGGGGTCTCATTTATCTTTCGTTGAATCTGTGCCATTCAAGATCATTGCTACGTTTACCCTCCTCCAGTTTGCATATTTCCTGTTGTGCTTTGGTGTAACATGGATACCTGTAGCTGGGATCCTGTTCCCACTGCCATTTTTCCTCCTCATTAGCATAAGAGAGCATGTGCTCCCCAAGTTCTTCCAGCATAGCCATCTTCAAGAGCTAGATGCTTCAGAGTATGAGGAGATTGCTGGTGCCGGACATCGCGCCATTAATCTCACAGCACCAGAAAAGGAGCCACCTGATTCAATTGCGGAAGAGAGTAACGAAGAATACTATGATGCCGAGATATTAGATGAGATGACAACTCATAGAGGAGAATTAAAGCTTAGAACTGTTCATCCCGAAGATTCCCTTCGAATGCAATGA 2115 44.92 MYEFQVPHLAILVPVFTKPRAKRWKICPPPHPLSLERKRNPLSSLCHIHRPRVMGAPFEGIVKDLKGRAACYKQDWISALCSGVRILAPTMYIFFASALPVIAFGEQLSRDTGGRLSTVETLASTALCGIIHSIFGGQPLLILGVAEPTVIMYIYLYSFSQGRPELGGDLFLAWAGWVCIWTGFFLILLAIFNACTVITKFTRVAGELFGMLIAVLFFQEAIKGLISEFQIPKSEKPEVLEYQFEWLYANGLLAVIFSMGLLFTALKSRHARSWKYGTGWFRSFIADYGVPLMVVFWTALSYGVPGEVPNGVPRRLFCPLPWEPASLYHWTVVKDMGKVPLTYIFAATLPAVMIAGLYFFDHSVASQMAQQKEFNLQNPSAYHYDVFLLGIMTVICGLLGLPPSNGVLPQSPMHTKSLAVLKRQLIRRKMVKSAKECIKQKASNSEIYGKMQAVFIEMDASPTPKELETLTKAVMNADEGDRKGKFDAEKNIDPYLPVRVNEQRMSNLLQSFLVAVLIFAIPIMRMIPTSVLWGYFAYMAVDSLPGNQFWERMLLLFITPGRRFKVLEGSHLSFVESVPFKIIATFTLLQFAYFLLCFGVTWIPVAGILFPLPFFLLISIREHVLPKFFQHSHLQELDASEYEEIAGAGHRAINLTAPEKEPPDSIAEESNEEYYDAEILDEMTTHRGELKLRTVHPEDSLRMQ 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24825907 24830485 + CmPI595203_08g012460.1 Cmu08g1246 422732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1246 704 Gene3D Helical hairpin bin 68 110 - -
Cmu08g1246 704 PANTHER ANION EXCHANGE PROTEIN 31 685 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Cmu08g1246 704 Pfam HCO3- transporter integral membrane domain 250 424 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cmu08g1246 704 Pfam HCO3- transporter integral membrane domain 498 640 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cmu08g1246 704 Pfam HCO3- transporter integral membrane domain 57 235 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Cmu08g1246 704 FunFam probable boron transporter 2 68 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0492 Cmu-Chr1:5048089 Cmu08g1246 Cmu-Chr8:24825907 9.70E-261 dispersed
Cmu04g0339 Cmu-Chr4:9726151 Cmu08g1246 Cmu-Chr8:24825907 2.00E-07 dispersed
Cmu08g1246 Cmu-Chr8:24825907 Cmu10g1945 Cmu-Chr10:24995149 8.40E-215 dispersed
Cmu07g1265 Cmu-Chr7:27922302 Cmu08g1246 Cmu-Chr8:24825907 2.70E-269 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1246 K24194 - csv:101220188 1224.15