Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1252 ATGGATTCTCCTAAAACTGCTCATCTTACTTCCATGTTAACCACCGTCTCCGGAGCCACTCCAACTTTTCCCACTTCTCCGTCGCAATCCTCTTCAGATTCTTTTTCAGACTTTGTTAATAATTTATTTCCAATAGAGCCCGGCGGGAGTGATTTTGCAACCCCAGGGTTTACTGGGCTTGAATCCTCTCCTTTTGTCTTATCTCCTCCAAATGTTGACTCAAATCTTCTGAAAAGGACTCACAATGCCCAGTCATCTAATACTGAATTAGTTGCCGAATTACAGGAATGTAACAGTAAGGATCCATGTAGTAACTATCAGGATTGCTTGGATTTTAGGCCTCAATCTTTTCATGAATGCAATAACAAAGAAACATTTGGGGGAGCTTTTCAGCCTCTACCAGTTCCTCAACCCCTTCATGGAATGAGTCAACGTTACCTTCAGTTTAAAGAAGCTTCTGCAAATGCTCCTCTAAACAGTTTTCCCTCAAATTTTACAAGTAACGTGAAGGCAACATCATATGATCCAGAATTCTCGGTTTTGAACTTGGATGCAGCATCCAATAACAGAGTATCAGCCAATTCATCTCGTTCCTGTACACTACTACCTCCTGATTCTGTTTGCAATCCTCCCTTGAGAATTTCCAAGCCTTCAGGTATAGGGTTGCACATCAATAACATTATTGATACTGTAATGAAGGAGCATGGCCCAATTGCAGGCTTGGGAATGCAAGGTGTAAGCTATCACATACTGAGAAATGAAAAAACCTGCTCAGAAAATGCCTCGTTGACAAGTTCCATCACTTTGAAGTCCTGCCATGCTGTTAAAGCCGAGCAATTTAGAAGTCCATATGAGACTAGAAATTTTGAATCCAACCAACCTTCTAACCTTGAGAAGATCAATAATTTTCATCCCAAAAGGAAACGGAAGAAAAGCTCAGTCAACAACAGTAGCGATGATTCAAAACGTTGCTGCAAATGTACAAAAACAAAATGCCTGAAACTGTATTGCGATTGTTTTGCCGCTGGGATGTATTGTAGTGAGTCTTGTTCTTGTCAATTGTGCTTTAACAAACCTGAGAGTTTACATATTGTTCTTGAGAGGAGGCATCAAATTGAATCTCGAGATCCGTTTGCATTTGCTCCGAGGGTTATTGAGGACCGTAACGAGCTTCCAGTAAATAACGAGAATGGAAGCCTATCGACGCCATCCTTGGCTAGACATAAAAAAGGGTGCAAGTGCAAGAAATCCATGTGCTCTAAACAATACTGCGAATGCTTTCAGGCTAATGTTGGATGCTCGGATAGATGTCGATGTGACAACTGTAAAAATGTCCATGGGAAGAGAGAAGAGGTAGCAACTGGTCGAGCTGATGTCGGAAGAAGACTCGTTGGCAGGTTGATTGATGACCATAATGCGACAGCATTAAGTCATGAAAAGGATTCCCCAAAATCCCGGTTCATGTCCGGAAGATGTCTCCCCTCGCCAGACTTTGACTCTACGAGCTCATCTTCTCCAGATTACAGCGACATTTTCGTAGAAACAAAGACAGACATATTGGATGTAAATTCTTTCAAGTGGCAGCAGATGAATTGTGATAATGGTGGAACCTCTTCAACGTCATTCATACCATCCAAGCTAAGGGGTTGTACAAACATTTCACGTATCGGCGAGCTACGCATCGGCAGTAGTTCTATCCTCTGTCGTCGTTCACCAGACACTCCCCTAATTCAGGCAGGCAACATGACATCCATTAATTGTATTAATGGAAGCTCTCCAGATAAAAAGGTAGCTTTGCCTCCTCTTTATGCATCTCTTCAGAAAGATTAG 1830 42.02 MDSPKTAHLTSMLTTVSGATPTFPTSPSQSSSDSFSDFVNNLFPIEPGGSDFATPGFTGLESSPFVLSPPNVDSNLLKRTHNAQSSNTELVAELQECNSKDPCSNYQDCLDFRPQSFHECNNKETFGGAFQPLPVPQPLHGMSQRYLQFKEASANAPLNSFPSNFTSNVKATSYDPEFSVLNLDAASNNRVSANSSRSCTLLPPDSVCNPPLRISKPSGIGLHINNIIDTVMKEHGPIAGLGMQGVSYHILRNEKTCSENASLTSSITLKSCHAVKAEQFRSPYETRNFESNQPSNLEKINNFHPKRKRKKSSVNNSSDDSKRCCKCTKTKCLKLYCDCFAAGMYCSESCSCQLCFNKPESLHIVLERRHQIESRDPFAFAPRVIEDRNELPVNNENGSLSTPSLARHKKGCKCKKSMCSKQYCECFQANVGCSDRCRCDNCKNVHGKREEVATGRADVGRRLVGRLIDDHNATALSHEKDSPKSRFMSGRCLPSPDFDSTSSSSPDYSDIFVETKTDILDVNSFKWQQMNCDNGGTSSTSFIPSKLRGCTNISRIGELRIGSSSILCRRSPDTPLIQAGNMTSINCINGSSPDKKVALPPLYASLQKD 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24898923 24904842 - CmPI595203_08g012520.1 Cmu08g1252 422738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1252 609 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 139 601 IPR044522 GO:0003700(InterPro)
Cmu08g1252 609 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 323 358 IPR005172 -
Cmu08g1252 609 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 409 445 IPR005172 -
Cmu08g1252 609 MobiDBLite consensus disorder prediction 286 300 - -
Cmu08g1252 609 ProSiteProfiles CRC domain profile. 321 447 IPR005172 -
Cmu08g1252 609 SMART CXC_2 407 448 IPR033467 -
Cmu08g1252 609 SMART CXC_2 320 361 IPR033467 -
Cmu08g1252 609 MobiDBLite consensus disorder prediction 286 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1252 K21776 - - cit:102611790 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0618 Cmu-Chr6:6962413 Cmu08g1252 Cmu-Chr8:24898923 7.50E-42 dispersed
Cmu06g0905 Cmu-Chr6:12383487 Cmu08g1252 Cmu-Chr8:24898923 1.50E-26 dispersed
Cmu08g1252 Cmu-Chr8:24898923 Cmu11g0227 Cmu-Chr11:2745170 1.10E-26 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1252 . 325 450 CPP Transcription Factor Family AT3G22780 57.1 2.5e-38 157.5
Cmu08g1252 . 297 450 CPP Transcription Factor Family AT4G14770 51.3 5.7e-40 162.9
Cmu11g0227 . 92 521 CPP Transcription Factor Family AT2G20110 61.9 7.3e-142 501.1
Cmu06g0905 . 65 579 CPP Transcription Factor Family AT2G20110 50.7 8.7e-127 451.1
Cmu08g1252 . 325 459 CPP Transcription Factor Family AT3G04850 52.2 5.7e-37 152.9
Cmu11g0227 . 29 528 CPP Transcription Factor Family AT4G29000 56.8 2.5e-151 532.7
Cmu06g0905 . 55 578 CPP Transcription Factor Family AT4G29000 53.3 3.0e-144 509.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014749 0 0 0 0 0 1 1 1 1 0 1 1 1 0 0 0 1 2 0 1 0 1 1 1 1 1 1 0 0 1 18
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6698 PF03638 TCR 1.30E-10 No_clan Cmu TF