Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1268 ATGGGAGAAACAAGGGACAACGAATACGAGGAAGAGCTCCTCGACTACGAGGAAGAGGAAGAGAAGGCTCCCGATTCCGTTGGAGCTAAAGTCAACGGTGAAGCTGGAAAGAAGGGTTATGTTGGAATTCATAGTTCGGGATTCAGAGACTTCCTATTGAAGCCAGAGCTTCTCCGTGCTATTGTAGACTCTGGATTTGAGCATCCATCTGAAGTGCAACATGAATGTATTCCCCAAGCTATCCTCGGCATGGATGTTATTTGTCAAGCTAAATCTGGTATGGGTAAAACAGCTGTTTTTGTTCTGTCAACACTGCAGCAGATTGACCCTGTTGCTGGTCAAGTTTCTGCCCTTGTTCTGTGCCATACTAGGGAGCTTGCATACCAGATCTGTCACGAGTTTGAAAGGTTCAGCACATATCTTCCGGATCTGAAGGTTGCCGTCTTCTATGGTGGAGTGAATATTAAAATTCACAAAGATCTTCTGAAAAATGAATGTCCTCATATCGTTGTTGGAACACCTGGAAGGATACTGGCATTGTCAAGAGATAAAGACCTATCCCTGAAGAATGTCCGGCATTTTATCTTGGATGAGTGTGACAAGATGCTCGAGTCACTTGATATGCGGAGGGATGTACAGGAGATCTTCAAGATGACTCCTCATGACAAACAAGTTATGATGTTTTCTGCAACACTCAGCAAAGAAATCCGCCCAGTTTGCAAGAAGTTTATGCAAGATCCAATGGAAATATATGTAGACGACGAGGCAAAGCTGACATTGCATGGTCTTGTCCAGCACTACATCAAATTGAGCGAGATGGAGAAAAATCGGAAGTTGAACGACCTCCTTGATGCGTTGGACTTCAATCAAGTGGTTATTTTTGTTAAAAGTGTTAATCGGGCAGCTGAGCTGGATAAGTTGTTGGTGGAGTGTAATTTTCCCTCCATATGCATCCACTCTGGCATGTCTCAGGAAGAGAGGTTGACTCGATACAAGGGTTTTAAGGAAGGACATAAGCGGATTCTCGTGGCTACAGATTTGGTTGGTCGAGGAATTGACATTGAACGTGTTAACATTGTTATCAATTATGACATGCCAGATTCTGCTGATACTTATCTGCACAGGGTTGGCAGAGCTGGTAGATTTGGCACCAAAGGGCTTGCAATTACGTTCGTATCATCTGCGGCTGATTCTGATGTTCTCAATAATGTTCAAGAAAGGTTTGAAGTCGATATTAAGGAGCTTCCAGAGCAGATTGATACATCCACTTACATTGTTTCTTGTCAGTCAGTTGCAGTTGATTTTGAATGTGCCATCATAGATGTAGAGATCTTCAGCATAGAATATCGGCTACCCAGCCTCTGTAATTCGGGAGCTGGGATTGGGATTGGAAGCATCGAAGAAAAGGAGAAAGAAGAGGAAGAGAGAGAGTTTGGTGGAGAAGATGAAGATGAAGAAGAAAGAGAGGATGGGAGGGGAAAGATAGAGTAA 1491 43.46 MGETRDNEYEEELLDYEEEEEKAPDSVGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYIVSCQSVAVDFECAIIDVEIFSIEYRLPSLCNSGAGIGIGSIEEKEKEEEEREFGGEDEDEEEREDGRGKIE 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25012389 25018592 - CmPI595203_08g012680.1 Cmu08g1268 422754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1268 496 SMART helicmild6 302 383 IPR001650 -
Cmu08g1268 496 Gene3D - 42 258 IPR027417 -
Cmu08g1268 496 MobiDBLite consensus disorder prediction 1 29 - -
Cmu08g1268 496 CDD DEADc_DDX39 45 252 - -
Cmu08g1268 496 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 410 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cmu08g1268 496 SMART ultradead3 65 266 IPR014001 -
Cmu08g1268 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Cmu08g1268 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 423 IPR001650 -
Cmu08g1268 496 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Cmu08g1268 496 Pfam Helicase conserved C-terminal domain 275 383 IPR001650 -
Cmu08g1268 496 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cmu08g1268 496 CDD SF2_C_DEAD 263 392 - -
Cmu08g1268 496 MobiDBLite consensus disorder prediction 474 489 - -
Cmu08g1268 496 MobiDBLite consensus disorder prediction 1 22 - -
Cmu08g1268 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724(InterPro)
Cmu08g1268 496 MobiDBLite consensus disorder prediction 464 496 - -
Cmu08g1268 496 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Cmu08g1268 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Cmu08g1268 496 Gene3D - 259 427 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1268 Cmu-Chr8:25012389 Cmu09g0076 Cmu-Chr9:936001 2.30E-62 dispersed
Cmu08g1268 Cmu-Chr8:25012389 Cmu07g1367 Cmu-Chr7:28966201 4.70E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1268 K12812 - csv:101217346 832.402