Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1270 ATGCCGCGCTTACTTCATGGGACGCTTCATGCCGATATATATGGAATCGACAGGCTTCAAACTGGATGTCCTATTTTCTGCGGGAAGGATAAAAGGTCGACCAAAAAGTTTCTTGCTGGAGTGAAGAGACGCATCCTTTGCCATCCCGAGATTGTTGGATCTCAAATGTATGCAACAGTTGATCTTGATAAGGCCAGAGTTGGGCGGACGAGGATAGTAGATCAGCCATACGCTCCTGAATGGAACGATCATTTTCGTATATATTGTGCTCATACAGTGTCACATATTATATTCACAGTTAAAGATGGAGGTGTAATCGGTGCAACATTGATTGGAAGAGCTTATGTGCCTGTTGAGGATATCATTAAGGGATTTGTATATGAGAAATGGGTTGAAATATTAGATGAAGACGGTAAGCCTTTATATGGTCGTTCTAGAATCCATGTGAAGTTACAATTTTCAAGTGTTAATGAAGACAGGAACTGGTCCCGAGGAATTCCAGATCCTTTCGGTGGTGTACCTTTCACATTCTTCAACCAAAGATGGGGTTGCAAAGTTTCTCTTTACCAGGATGCTCATGTTTTAAACAACTTCCTTCCTCGAGTTGGTTTGTCAGGAGGGAATTTTCATGAAGTACATAGGTGTTGGGAGGACATATTTGATGCAATTAGCAATGCGAGACACTTGATTTACATAACTGGTTGGTCTGTGTATACAGAAATAACTTTGATAAGAGACCGAGAAAGAAGACAGACAGGAGAGGATATTACTCTGGGGCAACTGCTAAAGAAGAAGGCAGACGAAGGTGTGACTGTTTTGCTTCTTGTTTGGGATGACAGAACTTCTACTGAAGAGTTCAAAAGAGATGGTTTGATGGCAACTCACGATCAAGAAACTGCAGAATACTTCAAGGGCTCGAAGGTACATTGCGTTCTGTGTCCACGGAATCCTGACGTTGGTAGAAGTATCATTCAGGGGTTTGAGACTGCTACAATGTTTACTCATCACCAAAAAACAGTTGTGCTTGATAGTGAAATAGCTGGTGGAGGAACAGAGAAAAGAAGGATCGTGAGTTTTGTTGGTGGTATTGATCTGTGTGATGGGAGATATGATACACCGAAGCACCCTTTGTTTTCAACTCTAGATTCAATCCACTATACCGATTTTCACCAGCCTAACTTTTCAGGCTCTTCAATTAGGAAAGGCGGTCCTCGGGAACCATGGCATGACATCCATTGCTGCCTAGAAGGACCTGTTGCTTGGGATATTTTGTACAATTTTGAGCAAAGATGGCGAAAGCAAGTTGGAAACAACTTGTTGATTCCAATGCAAAAGCTTGAAGAAACCATTACCCGCCCAGTAATGGTTTTACCAGCAGACGACCCTGACACATGGAATGTTCAAATATTTCGGTCTATTGATGGTGGTGCTGTAGCTCGCTTTCCAGAGATACCTGAGGATGCATCCAAAGTAGGCCTTGTAAGTGGGAAGAATAATGTTATAGATAGGAGTATTCAAGATGCTTATATTAATGCTATTCGCCGAGCAAAAAATTTCATATACATTGAGAATCAATATTTCCTTGGAAGCTCTTATGGTTGGAAATCAAATGGTATAAGGGTAGAAGAAATCAATGCTTTGCATCTTATTCCAAAGGAGATCTCACTGAAGATTGTGAGCAAGATCGAAGCTGGAGAGAGATTTACAGCATATATTGTGATTCCAATGTGGCCAGAAGGTATTCCTGAGAGTGCTTCAGTTCAAGCAATATTAGATTGGCAAAGGAGAACCTTGGACATGATGTACACAGATATAGCTCAAGCCCTTCGGAAGAAGGGTCTCGATGAAAATCCTAAAGATTACCTGACATTCTTCTGCCTTGGCAATCGAGAGAAGAAGAGAACTGGAGAATATGTACCACCGGAGAAGCCAGAACCCAATTCGGATTATGCTCGGGCTCAAGAGCACCGACGTTTTATGATCTATGTTCATTCAAAAATGATGATAGTTGACGATGAATACATAATTATTGGGTCTGCCAACATCAACCAGAGGTCAATGGATGGAGGAAGAGACTCTGAGATTGCAATGGGGGCTTTTCAACCTCATCACTTGGCATCTGGTGAGCCTGCAAGAGGTCAAATCTACGGCTTCAGAGTTGCTCTATGGTACGAGCATCTCGGTCTGTTTGACAAAGTCTTCCATAACCCAGAGACTGAAGACTGCATCCAATTCGTAAACAAGCTCGCTCTAGAGAACTGGCAATTTTACTCAGACGATACCTTTGATGGCGATCTTCCTGGCCATCTCCTTTCCTATCCCATTGAAGTAGGTCCCAACGGATCGGTTACGGCGCTGCCAAAGTTTGAATTTTTTCCTGACACCAAGGCTCGTGTTCTTGGGCAACTAGCCGAGTATCTACCTCCAATCCTCACCACTTGA 2442 42.63 MPRLLHGTLHADIYGIDRLQTGCPIFCGKDKRSTKKFLAGVKRRILCHPEIVGSQMYATVDLDKARVGRTRIVDQPYAPEWNDHFRIYCAHTVSHIIFTVKDGGVIGATLIGRAYVPVEDIIKGFVYEKWVEILDEDGKPLYGRSRIHVKLQFSSVNEDRNWSRGIPDPFGGVPFTFFNQRWGCKVSLYQDAHVLNNFLPRVGLSGGNFHEVHRCWEDIFDAISNARHLIYITGWSVYTEITLIRDRERRQTGEDITLGQLLKKKADEGVTVLLLVWDDRTSTEEFKRDGLMATHDQETAEYFKGSKVHCVLCPRNPDVGRSIIQGFETATMFTHHQKTVVLDSEIAGGGTEKRRIVSFVGGIDLCDGRYDTPKHPLFSTLDSIHYTDFHQPNFSGSSIRKGGPREPWHDIHCCLEGPVAWDILYNFEQRWRKQVGNNLLIPMQKLEETITRPVMVLPADDPDTWNVQIFRSIDGGAVARFPEIPEDASKVGLVSGKNNVIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSNGIRVEEINALHLIPKEISLKIVSKIEAGERFTAYIVIPMWPEGIPESASVQAILDWQRRTLDMMYTDIAQALRKKGLDENPKDYLTFFCLGNREKKRTGEYVPPEKPEPNSDYARAQEHRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDSEIAMGAFQPHHLASGEPARGQIYGFRVALWYEHLGLFDKVFHNPETEDCIQFVNKLALENWQFYSDDTFDGDLPGHLLSYPIEVGPNGSVTALPKFEFFPDTKARVLGQLAEYLPPILTT 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25028518 25032582 + CmPI595203_08g012700.1 Cmu08g1270 422756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1270 813 PIRSF PLD_plant 1 813 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cmu08g1270 813 Pfam Phospholipase D Active site motif 332 369 IPR001736 GO:0003824(InterPro)
Cmu08g1270 813 Pfam Phospholipase D Active site motif 661 686 IPR001736 GO:0003824(InterPro)
Cmu08g1270 813 SUPERFAMILY Phospholipase D/nuclease 170 447 - -
Cmu08g1270 813 Gene3D Endonuclease Chain A 472 703 - -
Cmu08g1270 813 SMART C2_3c 8 130 IPR000008 -
Cmu08g1270 813 Gene3D C2 domain 42 164 IPR035892 -
Cmu08g1270 813 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 331 369 IPR001736 GO:0003824(InterPro)
Cmu08g1270 813 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 659 686 IPR001736 GO:0003824(InterPro)
Cmu08g1270 813 PANTHER PHOSPHOLIPASE D 45 800 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cmu08g1270 813 FunFam Phospholipase D delta 206 450 - -
Cmu08g1270 813 Gene3D Endonuclease Chain A 207 455 - -
Cmu08g1270 813 Pfam C2 domain 54 132 IPR000008 -
Cmu08g1270 813 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 156 IPR035892 -
Cmu08g1270 813 ProSiteProfiles C2 domain profile. 1 131 IPR000008 -
Cmu08g1270 813 Pfam Phospholipase D C terminal 731 802 IPR024632 -
Cmu08g1270 813 SMART pld_4 331 369 IPR001736 GO:0003824(InterPro)
Cmu08g1270 813 SMART pld_4 659 686 IPR001736 GO:0003824(InterPro)
Cmu08g1270 813 FunFam Phospholipase D 472 705 - -
Cmu08g1270 813 SUPERFAMILY Phospholipase D/nuclease 493 741 - -
Cmu08g1270 813 CDD C2_plant_PLD 1 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1270 Cmu-Chr8:25028518 Cmu10g1179 Cmu-Chr10:4447374 8.80E-200 dispersed
Cmu07g1245 Cmu-Chr7:27763065 Cmu08g1270 Cmu-Chr8:25028518 0.00E+00 wgd
Cmu08g1270 Cmu-Chr8:25028518 Cmu09g0265 Cmu-Chr9:2664199 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1270 K01115 - csv:101207900 1568.52