Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1298 ATGGCCAGGCCTCAACAGCGTTATCGAGGCGTTCGTCAAAGACATTGGGGTTCTTGGGTCTCCGAAATTCGTCACCCTTTATTGAAGACCAGAATTTGGCTTGGTACTTTCGAAACGGCTGAAGATGCTGCTAAAGCTTACGATGAAGCTGCTCGCTTAATGTGCGGTCCAAGAGCAAGAACTAATTTCCCTTTCAACGCAAATGATTCCAATTCCTCTTCTTCTAAACTTCTCTCTCCCAATTTGACTGCAAAACTCCACCGTTGCTACATGGCGTCTCTTCATTTGCAGAAACCCGCCACCCATCGCTTCAATTCCGGTGCCGACGCGGCCGGGATTAAGCCCTTCACGGCGGAGGCAAAGACCCAAACGGAAACCGCGCATCAGCCTTTTGTGGCTCTGGAAGAGGATCATATCGAACAGATGATTGAGGAATTGATTCATTATGGGTCTGTTGAGCTCTGTTCTATTGTACCACCGTCTCCGGCGTTTTGA 495 48.89 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAAKAYDEAARLMCGPRARTNFPFNANDSNSSSSKLLSPNLTAKLHRCYMASLHLQKPATHRFNSGADAAGIKPFTAEAKTQTETAHQPFVALEEDHIEQMIEELIHYGSVELCSIVPPSPAF 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25240078 25240667 + CmPI595203_08g012980.1 Cmu08g1298 422784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1298 164 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
Cmu08g1298 164 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1298 164 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1298 164 FunFam Ethylene-responsive transcription factor 2 6 66 - -
Cmu08g1298 164 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1298 164 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1298 164 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 107 IPR050913 -
Cmu08g1298 164 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1298 164 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1298 164 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1687 Cmu-Chr5:26947181 Cmu08g1298 Cmu-Chr8:25240078 2.40E-52 dispersed
Cmu07g1223 Cmu-Chr7:27538320 Cmu08g1298 Cmu-Chr8:25240078 2.40E-38 dispersed
Cmu08g1298 Cmu-Chr8:25240078 Cmu09g0308 Cmu-Chr9:2935563 2.10E-44 dispersed
Cmu08g1297 Cmu-Chr8:25232813 Cmu08g1298 Cmu-Chr8:25240078 9.40E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6703 PF00847 AP2 9.50E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1298 - - - 0.0