Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1313 ATGGCAGGTTTCTCAAGAGCTCTGTTTCTTCTCACCTTCCTCCTCTTCAGCTTCTCAGAAGCTAGAGAGATATTGATCGGAGGCAAATCCGACGCCTGGAAAATTCCTTCGTCTCAATCTCAATCTCTCAATCAATGGGCTGAAGCCTCCCGCTTTCGCATCGGCGACACTCTCGTGTGGAATTACGAAGAAGGGAAAGATTCGGTACTGAAAGTGAGGAAGGAAGATTACGAAGCCTGCAATACCGTAAGCCCAGAACAGAGATTTGAGGATGGGAATACGAAAGTTGAGCTACAGAGACCAGGGCCATTTTATTTCATCAGTGGGGCAAAGGGCCATTGCGAGCAGGGCCAGAAGCTGATCGTTGTGGTTGTGACTCCTCGCCGCAGGTTCATCGGCATCTCTTCGGCGCCTTCTCCCGCGGAGAGTGAGGGTCCGGCGGTTGCTCCGTCGAGTGGAGCTGCAAATTTGAAGGTTGGACTTTTGGCGGTGATCGTCGGAATTTTGGGTGTTGGAATTGGTTTGTTGTGA 531 51.04 MAGFSRALFLLTFLLFSFSEAREILIGGKSDAWKIPSSQSQSLNQWAEASRFRIGDTLVWNYEEGKDSVLKVRKEDYEACNTVSPEQRFEDGNTKVELQRPGPFYFISGAKGHCEQGQKLIVVVVTPRRRFIGISSAPSPAESEGPAVAPSSGAANLKVGLLAVIVGILGVGIGLL 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25407403 25408013 + CmPI595203_08g013130.1 Cmu08g1313 422799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1313 176 FunFam Early nodulin-like protein 1 21 129 - -
Cmu08g1313 176 PANTHER BLUE COPPER PROTEIN 16 134 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cmu08g1313 176 SUPERFAMILY Cupredoxins 21 125 IPR008972 -
Cmu08g1313 176 Gene3D - 21 128 IPR008972 -
Cmu08g1313 176 CDD OsENODL1_like 22 124 IPR041846 -
Cmu08g1313 176 Pfam Plastocyanin-like domain 33 118 IPR003245 GO:0009055(InterPro)
Cmu08g1313 176 ProSiteProfiles Phytocyanin domain profile. 22 126 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1313 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1522 Cmu-Chr5:23378614 Cmu08g1313 Cmu-Chr8:25407403 2.50E-25 dispersed
Cmu08g1313 Cmu-Chr8:25407403 Cmu09g1877 Cmu-Chr9:34894225 6.70E-20 dispersed
Cmu08g1313 Cmu-Chr8:25407403 Cmu10g1367 Cmu-Chr10:6645634 3.30E-27 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu10g2300 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.3e-38 155.6
Cmu08g1313 . 7 169 Phytocyanin Superfamily AT2G25060 53.0 1.5e-43 172.9
Cmu10g2300 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 2.2e-47 185.7
Cmu08g1313 . 16 171 Phytocyanin Superfamily AT4G31840 54.5 7.9e-45 177.2
Cmu04g1176 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cmu04g1176 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cmu08g1313 . 7 169 Phytocyanin Superfamily AT2G25060 53.0 1.5e-43 172.9
Cmu08g1313 . 16 171 Phytocyanin Superfamily AT4G31840 54.5 7.9e-45 177.2
Cmu10g2300 . 14 127 Phytocyanin Superfamily AT3G01070 64.3 2.3e-38 155.6
Cmu10g2300 . 12 178 Phytocyanin Superfamily AT5G15350 52.7 2.2e-47 185.7
Cmu02g2248 . 11 229 Phytocyanin Superfamily AT1G08500 55.9 8.3e-63 237.3
Cmu03g2012 . 29 144 Phytocyanin Superfamily AT2G27035 58.6 2.1e-39 159.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010533 1 1 0 0 1 1 2 1 1 1 1 1 2 0 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31