Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1327 ATGGCTTCCAAGCTTTGTGACTCCTGTAAGTCGGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTATGCCTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTTTGCGAGCAAGCTCCTGCTCATGTAACCTGCAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACACCTCCAACTCCGACAACTCACTCGCCGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGACCGTTACTTCTCCGACGTCGACGGTGATGCCGCTGATGTTAGTAGAGAAGAAGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCGGTTCAGAGCAAAGGCGTTAATCTCTCATCCGTAAACGATCGCTGCTTCGGCATAGATTTCCCCAGCACCAAATCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATTGAGGTTGGAGTTGTGCCGGATGGGAACGCGATGACGGATGTATCAAATCCGTACACTAAACCGTCGACGGAATCGACGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAATTCGAAAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGTGAGTGGATACGGCGTCGTTCCATCCTTCTAA 1014 52.96 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLAVKPSAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPSTKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25505946 25507077 - CmPI595203_08g013270.1 Cmu08g1327 422813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1327 337 CDD Bbox1_BBX-like 48 91 IPR049808 -
Cmu08g1327 337 CDD Bbox1_BBX-like 5 48 IPR049808 -
Cmu08g1327 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515(InterPro)
Cmu08g1327 337 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 320 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cmu08g1327 337 Pfam CCT motif 276 318 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0721 Cmu-Chr6:8447842 Cmu08g1327 Cmu-Chr8:25505946 5.20E-07 dispersed
Cmu07g1509 Cmu-Chr7:30295524 Cmu08g1327 Cmu-Chr8:25505946 8.10E-07 dispersed
Cmu07g1594 Cmu-Chr7:31117840 Cmu08g1327 Cmu-Chr8:25505946 1.90E-29 dispersed
Cmu08g1327 Cmu-Chr8:25505946 Cmu11g1240 Cmu-Chr11:24326424 3.70E-43 dispersed
Cmu08g1327 Cmu-Chr8:25505946 Cmu06g1365 Cmu-Chr6:24850234 7.40E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6706 PF00643 zf-B_box 3.60E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1327 - - - 0.0