Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1327 ATGGCTTCCAAGCTTTGTGACTCCTGTAAGTCGGCCACCGCCACTCTCTTCTGCCGAGCTGACTCTGCCTTCCTATGCCTTGGCTGTGACTCCAAAGTTCACGCCGCCAACAAACTCGCCTCTCGCCATGCTCGCGTTTGGGTCTGTGAAGTTTGCGAGCAAGCTCCTGCTCATGTAACCTGCAAGGCTGACGCCGCCGCTCTCTGCCTCACTTGCGACCACGATATTCACTCTGCTAATCCCCTCGCTCGCCGTCACGAGCGAGTTCCCGTCACGCCTTTCTACGACACCTCCAACTCCGACAACTCACTCGCCGTTAAACCTAGCGCTGCAATCAACTTCCTCGATGACCGTTACTTCTCCGACGTCGACGGTGATGCCGCTGATGTTAGTAGAGAAGAAGCCGAGGCTGCTTCCTGGCTTCTTCCGAACCCTAACCCTAAGGCAATCGAAAGTTCAGATCTGAACTCAGGGAAGTTTGAGTTTCCAGAAATGGATCCTTACCTAGATCTGGATTACGGCCATGTAGATCCGAAATTGGAAGCGCAAGAGCAAAACAGCTCCGGCGCCGATGGAGTTGTTCCGGTTCAGAGCAAAGGCGTTAATCTCTCATCCGTAAACGATCGCTGCTTCGGCATAGATTTCCCCAGCACCAAATCGTTCCCGTACGGTTACAATCCTCAGTCAATCAGTCACAGTGTATCATCCTCTTCGATTGAGGTTGGAGTTGTGCCGGATGGGAACGCGATGACGGATGTATCAAATCCGTACACTAAACCGTCGACGGAATCGACGGTTCAACCGCTGCAAATCTCGCCGGCGGATCGGGAGGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACAGAAAATTCGAAAAGACGATCCGATACGCATCTCGTAAGGCTTACGCCGAGACGAGACCTCGAATCAAAGGACGGTTCGCCAAACGGACGGACATCGAACTTGATGTTGACAGAGTGAGTGGATACGGCGTCGTTCCATCCTTCTAA 1014 52.96 MASKLCDSCKSATATLFCRADSAFLCLGCDSKVHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCLTCDHDIHSANPLARRHERVPVTPFYDTSNSDNSLAVKPSAAINFLDDRYFSDVDGDAADVSREEAEAASWLLPNPNPKAIESSDLNSGKFEFPEMDPYLDLDYGHVDPKLEAQEQNSSGADGVVPVQSKGVNLSSVNDRCFGIDFPSTKSFPYGYNPQSISHSVSSSSIEVGVVPDGNAMTDVSNPYTKPSTESTVQPLQISPADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDIELDVDRVSGYGVVPSF 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25505946 25507077 - CmPI595203_08g013270.1 Cmu08g1327 422813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1327 337 CDD Bbox1_BBX-like 48 91 IPR049808 -
Cmu08g1327 337 CDD Bbox1_BBX-like 5 48 IPR049808 -
Cmu08g1327 337 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515(InterPro)
Cmu08g1327 337 SMART bboxneu5 1 48 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 SMART bboxneu5 49 91 IPR000315 GO:0008270(InterPro)
Cmu08g1327 337 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 4 320 IPR045281 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0009909(InterPro)|GO:0009909(PANTHER)
Cmu08g1327 337 Pfam CCT motif 276 318 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0721 Cmu-Chr6:8447842 Cmu08g1327 Cmu-Chr8:25505946 5.20E-07 dispersed
Cmu07g1509 Cmu-Chr7:30295524 Cmu08g1327 Cmu-Chr8:25505946 8.10E-07 dispersed
Cmu07g1594 Cmu-Chr7:31117840 Cmu08g1327 Cmu-Chr8:25505946 1.90E-29 dispersed
Cmu08g1327 Cmu-Chr8:25505946 Cmu11g1240 Cmu-Chr11:24326424 3.70E-43 dispersed
Cmu08g1327 Cmu-Chr8:25505946 Cmu06g1365 Cmu-Chr6:24850234 7.40E-68 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g1327 . 6 337 C2C2-CO-like Transcription Factor Family AT5G15850 50.6 1.6e-41 167.2
Cmu08g1327 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.7 3.5e-84 308.9
Cmu06g1365 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 2.6e-58 223.0
Cmu06g1365 . 1 375 C2C2-CO-like Transcription Factor Family AT5G57660 50.8 4.6e-68 255.4
Cmu08g1327 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 4.9e-54 208.8
Cmu02g1085 . 1 416 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 6.9e-91 331.3
Cmu02g0306 . 83 489 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 1.7e-89 326.6
Cmu02g1085 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 2.4e-88 322.8
Cmu02g0306 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cmu02g1085 . 1 416 C2C2-CO-like Transcription Factor Family AT5G48250 54.6 2.4e-88 322.8
Cmu02g0306 . 83 489 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 1.8e-86 316.6
Cmu02g0501 . 1 208 C2C2-CO-like Transcription Factor Family AT1G75540 54.7 8.1e-51 198.0
Cmu11g0403 . 1 184 C2C2-CO-like Transcription Factor Family AT1G75540 52.5 8.1e-43 171.4
Cmu07g1002 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 50.6 1.4e-76 283.5
Cmu07g0835 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 61.1 9.7e-56 213.4
Cmu01g1950 . 1 107 C2C2-CO-like Transcription Factor Family AT2G21320 81.3 5.7e-48 187.6
Cmu07g0835 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 63.4 6.4e-58 220.7
Cmu01g1950 . 1 114 C2C2-CO-like Transcription Factor Family AT4G38960 79.1 5.5e-49 191.0
Cmu02g0501 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 60.4 8.0e-56 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010751 0 1 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6706 PF00643 zf-B_box 3.60E-06 No_clan Cmu TF