Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1343 ATGAACGGTCATGATGCGGAGCCGTTGGTGTACGTTCACGGCGACCTCGATTTGAAGATCATTGAGGCGCGCCGTTTGCCTAATATGGATTTGCTAACGGAACGTATTCGGCGGTTTTTTACTGTTTTTACTTCTTGTCGGAAACCGTTTTCCAAGAAGAAGGATAAGGATGATCATCAGCATCACCGGAAGATTATTACTAGTGATCCTTACGTCACTGTTTGTCTTGCTGGAGCGACGGTTGCTCGGACGCGAGTTATTTCGAACTCGCAGAACCCTGTCTGGAATGAGCACTTCAAAATCCCTCTTGCTCATCCGGTCTCGCAGGTGGAGTTTCATGTCAAGGATAACGATGTGTTTGGTGCGGATTTGATTGGTATTGCAACGGTCCCTGCGCGCAGAGTTCTTTCTGGCGAAACCATAGATGATTGGTTTCCGATTATCGGTTCGTTCGGGAAACCGCCGAAGCCGGATTCGGCGGTGCGTTTGGAAATGAAATTCACCAAGTGCGAGGAGAATCCTCTGTACCGTTATGGCATTGCGGCCGATCCCGAACATTTTGGCGTTCGGAATTGTTATTTTCCGGTACGGCATGGAGGTTCGGTAACGCTTTATCAGGACGCGCACGTTCCTGATTCCATGTTGGAGAAGATTGAATTGGAAAAGGGGAATGTGTATCAGCATGAGAATTGCTGGGAGGATATATGCCATGCAATTTTGGAGGCTCACCATTTAGTCTACATCGCCGGTTGGTCCATATATCATAAGGTGAAGCTGGTGAGAGAGCCTTCAAAGCCGTTGCCTAATGGTGGGAATTTGAACCTGGGAGAGTTGCTCAAGTACAAGTCACAGGAAGGTGTGCGAGTCTTGTTATTGGTTTGGGATGACAAGACTTCCCACAGCAAATTCTTCATTAATACGACTGGAGTGATGCAGACTCATGATGAGGAGACCCGGAAGTTTTTCAAGCACTCTTCTGTATCATGTGTGCTGTCACCCCGATATGCCAGCAGTAAGCTTAGCATTTTTAAGCAACAGGTTGTTGGAACGCTTTTCACCCATCACCAGAAGTGCGTGATTGTGGATACACAAGCATCTGGAAATTACCGGAAGATAAGTTCTTTTATTGGAGGACTTGACCTTTGCGATGGTCGTTATGATACTCCTGAGCATCGGTTGTTAAAAGATCTTGACACTGTATTTGAGGATGATTATCACAATCCAACTTTTTCTGGAGGTACAAAGGGTCCTCGGCAGCCATGGCATGATTTACATTGCAAAATTGAAGGGCCTGCGGCATATGATGTGCTCACTAACTTTGAACAACGATGGCGAAAAGCCACAAAATGGTCCGAATTAGGTCAGCGGTTCAAAAGAGTATCGCATTGGCATGAAGATGCTTTAATAAAGTTGGAACGCATATCTTGGATACTTAGTCCATCTCAGTCAGTCCCCAACGATGATCCTTTGTTATGGGTTTCCAAGGAAAATGATCCTGGCAATTGGCATGTTCAGGTTTTCCGGTCCATAGATTCAGGATCTTTGAAAGGATTTCCCAAAGATGTTTTTCAAGCTGAGTTGCAGAATCTGGTTTGTGCAAAAAATTTGGTTATTGACAAAAGCATTCAAACAGCATATATTCAAGCAATAAGATCTGCCCAACACTTCATATACATTGAGAATCAGTATTTTCTTGGATCGTCATTTGCGTGGCCTTCGTACAAAGAAGCAGGTGCTGATAATCTTATTCCTATGGAATTGGCGTTGAAGATTGCTAGTAAGATAAGAGCGAATGAGAGGTTTGCTGTCTACGTTGTAATACCAATGTGGCCTGAAGGGGTTCCCACTTCTGTTTCTGTGCAAGAAATCCTATTTTGGCAGGGTCAGACAATCCAAATGATGTATGAAGTCATTGGAAGAGAGTTGAAATATAAGAATCTTGAGAACGCTCATCCCTCAGACTACCTGAACTTTTTCTGTCTTGGAAATAGGGAACCGCACGAGGACTTGACATGTTCCTCTGGTCATTCTTCCAAGAGCGAAGATGTGGTTCCAGACTCACAAAAGTTCCGTAGATTCATGATATATGTGCATGCGAAAGGAATGATTGTTGATGATGAGTATGTAATAATAGGGTCTGCAAATATAAATCAAAGATCAATGGCTGGTTCAAGGGACACTGAGATTGCCATGGGCGCATATCAACCCAGTTACACATGGGGTAAGAAGAAACGACATCCACAAGGCCAGGTTTATGGCTATAGAATGTCGCTCTGGGCTGAACATTTGGGAAACATTGACGATTGCTTCAAGGAGCCCGAAAGTTTGACTTGTGTGAAGGCAGTCAACAAGATAGCTGAAGATAACTGGAAGAAATACACCGCAACGGAATTTGTGCCATTGCAAGGGCACCTCCTTAAGTACCCGATCGAGGTCAGCCAAAGTGGGAAGATAGGTCCATTGACTGGACACGAGACTTTCCCTGACTTTGGTGGTAAGTTCAATTCTCTTCACTTTCAAGCATGGGAAAGAGAGATGCATTTGTTCGAGAATGGAGCAGAAACAGAAACAAAGCCGTATAACCAGGTTGTCCAAGGCCGTAACCAAGGTTGTTGCTGGATAGTTGATAAGTCCGATCAGTTGATTAGAATCGGTTCAGGTATGCACAATTTTGGAGGTCCTAATCTCTCTCCATTCTTGGCAACTTCTTACTTCAGTGCTCATAAATTCATCTAA 2736 44.33 MNGHDAEPLVYVHGDLDLKIIEARRLPNMDLLTERIRRFFTVFTSCRKPFSKKKDKDDHQHHRKIITSDPYVTVCLAGATVARTRVISNSQNPVWNEHFKIPLAHPVSQVEFHVKDNDVFGADLIGIATVPARRVLSGETIDDWFPIIGSFGKPPKPDSAVRLEMKFTKCEENPLYRYGIAADPEHFGVRNCYFPVRHGGSVTLYQDAHVPDSMLEKIELEKGNVYQHENCWEDICHAILEAHHLVYIAGWSIYHKVKLVREPSKPLPNGGNLNLGELLKYKSQEGVRVLLLVWDDKTSHSKFFINTTGVMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQASGNYRKISSFIGGLDLCDGRYDTPEHRLLKDLDTVFEDDYHNPTFSGGTKGPRQPWHDLHCKIEGPAAYDVLTNFEQRWRKATKWSELGQRFKRVSHWHEDALIKLERISWILSPSQSVPNDDPLLWVSKENDPGNWHVQVFRSIDSGSLKGFPKDVFQAELQNLVCAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFLGSSFAWPSYKEAGADNLIPMELALKIASKIRANERFAVYVVIPMWPEGVPTSVSVQEILFWQGQTIQMMYEVIGRELKYKNLENAHPSDYLNFFCLGNREPHEDLTCSSGHSSKSEDVVPDSQKFRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGSRDTEIAMGAYQPSYTWGKKKRHPQGQVYGYRMSLWAEHLGNIDDCFKEPESLTCVKAVNKIAEDNWKKYTATEFVPLQGHLLKYPIEVSQSGKIGPLTGHETFPDFGGKFNSLHFQAWEREMHLFENGAETETKPYNQVVQGRNQGCCWIVDKSDQLIRIGSGMHNFGGPNLSPFLATSYFSAHKFI 911
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25651705 25657575 - CmPI595203_08g013430.1 Cmu08g1343 422829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1343 911 FunFam Phospholipase D delta 222 465 - -
Cmu08g1343 911 PIRSF PLD_plant 1 845 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cmu08g1343 911 PANTHER PHOSPHOLIPASE D 11 834 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cmu08g1343 911 SUPERFAMILY Phospholipase D/nuclease 202 456 - -
Cmu08g1343 911 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824(InterPro)
Cmu08g1343 911 SUPERFAMILY Phospholipase D/nuclease 539 778 - -
Cmu08g1343 911 Pfam Phospholipase D C terminal 767 833 IPR024632 -
Cmu08g1343 911 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 169 IPR035892 -
Cmu08g1343 911 Pfam Phospholipase D Active site motif 695 720 IPR001736 GO:0003824(InterPro)
Cmu08g1343 911 Pfam C2 domain 15 146 IPR000008 -
Cmu08g1343 911 SMART C2_3c 15 144 IPR000008 -
Cmu08g1343 911 Gene3D C2 domain 12 175 IPR035892 -
Cmu08g1343 911 SMART pld_4 350 385 IPR001736 GO:0003824(InterPro)
Cmu08g1343 911 SMART pld_4 693 720 IPR001736 GO:0003824(InterPro)
Cmu08g1343 911 CDD C2_plant_PLD 10 168 - -
Cmu08g1343 911 Gene3D Endonuclease Chain A 215 468 - -
Cmu08g1343 911 Gene3D Endonuclease Chain A 521 739 - -
Cmu08g1343 911 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 693 720 IPR001736 GO:0003824(InterPro)
Cmu08g1343 911 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0476 Cmu-Chr6:5337298 Cmu08g1343 Cmu-Chr8:25651705 1.60E-39 dispersed
Cmu08g1343 Cmu-Chr8:25651705 Cmu09g0265 Cmu-Chr9:2664199 4.00E-193 dispersed
Cmu06g0019 Cmu-Chr6:209453 Cmu08g1343 Cmu-Chr8:25651705 5.40E-269 transposed
Cmu10g1179 Cmu-Chr10:4447374 Cmu08g1343 Cmu-Chr8:25651705 1.70E-249 transposed
Cmu01g2005 Cmu-Chr1:33269239 Cmu08g1343 Cmu-Chr8:25651705 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1343 K01115 - csv:101213442 1652.11