Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1366 ATGGCGGCGGACGGATTTCAATTTCTATTGGGGCTCTTAAGTCTGCTGCTTTTGGTACCAGGTGGGTTTTCGACGAGCTTTACTTTTGTGAACAAATGTGGATTCACGGTTTGGCCGGGGGTTCTGTCGAACGGTGGCGTTCCACCGCTTCCCACTACTGGCTTCTCTCTTCAGACTGGAGAGTCCAAGACACTACCGGCGCCGGCGTCTTGGGGCGGGCGTTTCTGGGGGCGAACACTCTGCTCTGAAGATTCCACCGGGAAATTCTCCTGCGCTACTGGCGACTGTGGCTCTAACAAACTAGAGTGTGCTGGAAACGGAGCAACGCCACCGGCGACTCTCGCGGAGTTCACCCTCGACGGCTCCGGCGGGCTTGATTTCTTCGACGTTAGTCTGGTGGACGGTTACAATCTTCCGATGATTGTGGTGCCTCAGGGTGGTTCCGGCGACAACTGCACGAGCACCGGCTGCGTGGTGGATCTGAACGGCGCGTGTCCATCAGAGTTGCGCGTGACGAGTGCCGACGGAAGAGAAGGCGTGGCGTGTAAAAGCGCGTGTGATGCCTTCAATCAACCGCAGTATTGTTGCACAGGCGCGTACCAAACACCGGATACTTGTCAGCCATCGATGTACTCTCAGATCTTCAAGAGAGCGTGCCCACGCGCTTACAGCTACGCGTACGATGATAAGACGAGTACTTTCACATGCGCTAGTGCTGATTACGTCATCACCTTCTGTCCATCGCCAAACACCAGCCAAAAGTCCTCGGAGGCACAGAATTTACCTGCGACGGCGAACCCATCTTCCGGCGGCGATGGTGCGATGGTGTACGAAGGTGCATCCCTAATTCAAACCGACTCAGCGCCACCGCGCTTACCCGGGATTTCGGCGGTCGGTGCGGTGGCGATTTGGTGGTTGTGGCAGCTGTTCTTCTACTTCTGA 942 56.37 MAADGFQFLLGLLSLLLLVPGGFSTSFTFVNKCGFTVWPGVLSNGGVPPLPTTGFSLQTGESKTLPAPASWGGRFWGRTLCSEDSTGKFSCATGDCGSNKLECAGNGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMIVVPQGGSGDNCTSTGCVVDLNGACPSELRVTSADGREGVACKSACDAFNQPQYCCTGAYQTPDTCQPSMYSQIFKRACPRAYSYAYDDKTSTFTCASADYVITFCPSPNTSQKSSEAQNLPATANPSSGGDGAMVYEGASLIQTDSAPPRLPGISAVGAVAIWWLWQLFFYF 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25862574 25863961 - CmPI595203_08g013660.1 Cmu08g1366 422852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1366 313 Gene3D Thaumatin 25 247 IPR037176 -
Cmu08g1366 313 PANTHER OS03G0233200 PROTEIN 14 247 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Cmu08g1366 313 SMART tha2 27 247 IPR001938 -
Cmu08g1366 313 CDD TLP-PA 26 246 - -
Cmu08g1366 313 Pfam Thaumatin family 31 247 IPR001938 -
Cmu08g1366 313 FunFam THAUMATIN-LIKE PROTEIN 1 25 247 - -
Cmu08g1366 313 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Cmu08g1366 313 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cmu08g1366 313 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cmu08g1366 313 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cmu08g1366 313 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cmu08g1366 313 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1178 Cmu-Chr2:24439827 Cmu08g1366 Cmu-Chr8:25862574 6.90E-99 dispersed
Cmu05g1865 Cmu-Chr5:28654154 Cmu08g1366 Cmu-Chr8:25862574 7.10E-126 dispersed
Cmu05g2519 Cmu-Chr5:34025117 Cmu08g1366 Cmu-Chr8:25862574 9.20E-78 dispersed
Cmu08g1366 Cmu-Chr8:25862574 Cmu10g0917 Cmu-Chr10:1175841 1.50E-91 dispersed
Cmu08g1365 Cmu-Chr8:25846796 Cmu08g1366 Cmu-Chr8:25862574 1.90E-76 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1366 - - - 0.0