Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1381 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGAGTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGAAGAACGCAGACTCGACGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTCCCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAAAAAAATTACCTCCGAAGGAATTCCTCACATGA 1227 42.38 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDESEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYAEERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRIFPLHNNIDDDYWFQSNSQKKLPPKEFLT 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25964876 25969000 + CmPI595203_08g013810.1 Cmu08g1381 422867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1381 408 Gene3D - 150 222 IPR036388 -
Cmu08g1381 408 MobiDBLite consensus disorder prediction 48 70 - -
Cmu08g1381 408 MobiDBLite consensus disorder prediction 55 69 - -
Cmu08g1381 408 PANTHER TRANSCRIPTION FACTOR E2F 64 372 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cmu08g1381 408 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Cmu08g1381 408 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Cmu08g1381 408 MobiDBLite consensus disorder prediction 98 154 - -
Cmu08g1381 408 Coils Coil 243 274 - -
Cmu08g1381 408 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Cmu08g1381 408 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu08g1381 408 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Cmu08g1381 408 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu08g1381 408 FunFam E2F transcription factor 1 149 222 - -
Cmu08g1381 408 MobiDBLite consensus disorder prediction 98 123 - -
Cmu08g1381 408 Gene3D - 227 337 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2221 Cmu-Chr2:35789473 Cmu08g1381 Cmu-Chr8:25964876 1.60E-57 dispersed
Cmu06g1715 Cmu-Chr6:28178885 Cmu08g1381 Cmu-Chr8:25964876 7.70E-08 dispersed
Cmu08g1381 Cmu-Chr8:25964876 Cmu04g1074 Cmu-Chr4:25297633 6.40E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6707 PF16421 E2F_CC-MB 1.60E-26 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1381 K06620 - csv:101211469 650.973