Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1381 ATGTCGAACGCCGTCGAAGATCTCATCCTCCGCCACCGCCACTCCGATTTTCGATTTCAACTCCTTCGTTCTCACTCTCACCATCGCGACATGTCTTCTTCTTCTTCTTCTTCTTCCTCAGCTCCAGCTCTTCCGCCTCTGTGTTTCCTTCAGTACCATCGGCCTTCTCCGCCGTCGGATCAGTCCAACGCTTGCGACGGCCGTCTCGCTCCCGACACACATTCTACAGTTGCTACGCTCGACTTGAAACGAGCATATGATATTGATGAGTCCGAGGCTTTGGCTAGTAGACAAGTTGTAGCATCTGAACAGAGGATGCGATCTAATGATTCTTCATGTGAACCAGTATCCAGTGCAAATGAAAAGCAAAACAAAAAATTGAAGTTGCAGAAAAATTCAAAGTCTAGAACTCAAAAATCAATAGATGAGCCTGTTGATGGTCCTAATCTATCTACTAACGGTCGGTACGATAGCTCGTTAGGCTTCTTGACAAAAAAATTTATCAGGTTAGTTCAGGAGGCTGAAGATGGAACACTTGATTTAAATAAAACTGCAGACGTATTAAAGGTTCAAAAGAGGAGGATTTATGATATTACAAATGTTCTTGAAGGAATAGGTCTGATAGAGAAAACCACGACGAACCACATACGTTGGAAGGGATGCGAGAGGCGTGGGCCTCAAGAGCTCAACGATGAAGTTGGTAAATTAAAGGATGAAGTTAAAAGTTTATATGCAGAAGAACGCAGACTCGACGAACTTATAAGGATGAAACAAGAACTTCTGAGAAATCTCGAGGAAAATGCAAACCGCAGGAAGAACCTTTTTATAACAGAGGAAGATATCTTGCGAATTCCTTGCTTCAAGAATCAGACACTTATAGCGGTTAAAGCCCCACAAGCTAGCTGTATTGAAGTGCCCGATCCGGATGAGGAGGCTTGTTTTTCTGAGAGGCAGTGTAGACTGATCATCAGAAGCACCACTGGGCCAATTGATTTGTACCTCTTGAGGGCTGCAAAACAAGGGCCGGAAGAAAATACTTCCAAGCAAGCGAAACTATCTTCAGTACAGCACAAGAATCCTAACATATATACCAACAATACTTGTTCTCCTTTCCAAGAATTTCATGGAATGCAAAGAATTTTCCCTTTACATAATAATATAGACGATGATTACTGGTTCCAATCAAATTCTCAAAAAAAATTACCTCCGAAGGAATTCCTCACATGA 1227 42.38 MSNAVEDLILRHRHSDFRFQLLRSHSHHRDMSSSSSSSSSAPALPPLCFLQYHRPSPPSDQSNACDGRLAPDTHSTVATLDLKRAYDIDESEALASRQVVASEQRMRSNDSSCEPVSSANEKQNKKLKLQKNSKSRTQKSIDEPVDGPNLSTNGRYDSSLGFLTKKFIRLVQEAEDGTLDLNKTADVLKVQKRRIYDITNVLEGIGLIEKTTTNHIRWKGCERRGPQELNDEVGKLKDEVKSLYAEERRLDELIRMKQELLRNLEENANRRKNLFITEEDILRIPCFKNQTLIAVKAPQASCIEVPDPDEEACFSERQCRLIIRSTTGPIDLYLLRAAKQGPEENTSKQAKLSSVQHKNPNIYTNNTCSPFQEFHGMQRIFPLHNNIDDDYWFQSNSQKKLPPKEFLT 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25964876 25969000 + CmPI595203_08g013810.1 Cmu08g1381 422867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1381 408 Gene3D - 150 222 IPR036388 -
Cmu08g1381 408 MobiDBLite consensus disorder prediction 48 70 - -
Cmu08g1381 408 MobiDBLite consensus disorder prediction 55 69 - -
Cmu08g1381 408 PANTHER TRANSCRIPTION FACTOR E2F 64 372 IPR015633 GO:0000978(InterPro)|GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cmu08g1381 408 Pfam E2F transcription factor CC-MB domain 236 335 IPR032198 GO:0046983(InterPro)
Cmu08g1381 408 SUPERFAMILY E2F-DP heterodimerization region 232 335 IPR037241 -
Cmu08g1381 408 MobiDBLite consensus disorder prediction 98 154 - -
Cmu08g1381 408 Coils Coil 243 274 - -
Cmu08g1381 408 CDD E2F_DD 231 335 IPR032198 GO:0046983(InterPro)
Cmu08g1381 408 Pfam E2F/DP family winged-helix DNA-binding domain 157 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu08g1381 408 SUPERFAMILY Winged helix DNA-binding domain 155 218 IPR036390 -
Cmu08g1381 408 SMART E2F_TDP_2 155 220 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cmu08g1381 408 FunFam E2F transcription factor 1 149 222 - -
Cmu08g1381 408 MobiDBLite consensus disorder prediction 98 123 - -
Cmu08g1381 408 Gene3D - 227 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1381 K06620 - - csv:101211469 650.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2221 Cmu-Chr2:35789473 Cmu08g1381 Cmu-Chr8:25964876 1.60E-57 dispersed
Cmu06g1715 Cmu-Chr6:28178885 Cmu08g1381 Cmu-Chr8:25964876 7.70E-08 dispersed
Cmu08g1381 Cmu-Chr8:25964876 Cmu04g1074 Cmu-Chr4:25297633 6.40E-58 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g1380 . 575 929 E2F-DP Transcription Factor Family AT3G48160 56.6 9.4e-102 367.5
Cmu10g1704 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cmu02g2221 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 1.6e-119 426.8
Cmu04g1074 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.0 5.9e-119 424.9
Cmu02g2221 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 6.5e-115 411.4
Cmu04g1074 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-97 353.6
Cmu08g1381 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.9 4.0e-56 216.1
Cmu02g2221 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cmu08g1381 . 151 401 E2F-DP Transcription Factor Family AT1G47870 53.8 6.4e-63 238.4
Cmu10g1704 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cmu02g2221 . 10 446 E2F-DP Transcription Factor Family AT5G22220 57.4 6.5e-115 411.4
Cmu04g1074 . 11 458 E2F-DP Transcription Factor Family AT5G22220 50.3 1.6e-97 353.6
Cmu08g1381 . 155 344 E2F-DP Transcription Factor Family AT5G22220 58.9 4.0e-56 216.1
Cmu02g2221 . 21 441 E2F-DP Transcription Factor Family AT2G36010 55.1 1.6e-119 426.8
Cmu04g1074 . 11 451 E2F-DP Transcription Factor Family AT2G36010 55.0 5.9e-119 424.9
Cmu02g2221 . 139 415 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cmu08g1381 . 151 401 E2F-DP Transcription Factor Family AT1G47870 53.8 6.4e-63 238.4
Cmu01g1380 . 575 929 E2F-DP Transcription Factor Family AT3G48160 56.6 9.4e-102 367.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012017 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6707 PF16421 E2F_CC-MB 1.60E-26 No_clan Cmu TF