Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1400 ATGGCTGGGTTCTTCTATCTAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAGAACTTGTTTCTGTACAGAAATGAAGAGATCTACAACAAGGGTTTTGAGATATGGCCTCAACAATACAACAACAACAACAACAATCATCAACAACAACAACCAAATCCTTCTCTTACAAACCACTTGTCTTTCGGTGTTGGTCCCAGCCGCCGTAGCTTCATGATCAACGACCCTTCCGATGAGCCTTCCAGATCAGCTTTCACCGTCATGCGGCCTGCCGCTGCCGCCTTCGCCGCCGCCTCTGCCGCTACTGCTGGTGGCATGAATTGCCAAGACTGCGGCAACCAAGCTAAGAAGGATTGCGCTTATTTGCGGTGTAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAGACACACGTGAAAAGCACGTGGGTTCCGGCTGCGAAACGCCGTGAGAGGCAACAGCAAATTGCCGCCTTACAGCAACAGCAGCAGCAACAAGAACAGTTTCGTGGCGGTGAGAATTCCAAAAGACAAAGAGAAACCCAAACTGCCGCCGCTGTTACCGCTGCCACCGCCTCCGCCTCCGCTTGCCCTCGTTTGCCTTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGTGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCCGTGAACATTGGTGGTCACGTGTTCAAAGGAATTCTCTACGACCAAGGTCCTGAAATCCGTTACACCGCAGCCGGTGAGAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGACCCACTTCCGCCACTACCTCCGCCGCAACTAGTACCAACCCCTCCGCTGCCGCCGCCGCCGCTCCGTTGCTTGACCCTTCTATCTATCCAGCTCCTCTAAATGCATTTATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1029 52.58 MAGFFYLGGREGPPNKQEEEEEREQNLFLYRNEEIYNKGFEIWPQQYNNNNNNHQQQQPNPSLTNHLSFGVGPSRRSFMINDPSDEPSRSAFTVMRPAAAAFAAASAATAGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQQEQFRGGENSKRQRETQTAAAVTAATASASACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEIRYTAAGESSSGHGGDGSTHPLNLIAGPTSATTSAATSTNPSAAAAAAPLLDPSIYPAPLNAFMAGTQFFPPSRS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26158467 26159890 + CmPI595203_08g014000.1 Cmu08g1400 422886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1400 342 MobiDBLite consensus disorder prediction 272 304 - -
Cmu08g1400 342 MobiDBLite consensus disorder prediction 278 304 - -
Cmu08g1400 342 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
Cmu08g1400 342 Pfam Domain of unknown function (DUF702) 112 267 - -
Cmu08g1400 342 NCBIfam LRP1 C-terminal domain 218 266 IPR006511 -
Cmu08g1400 342 MobiDBLite consensus disorder prediction 46 67 - -
Cmu08g1400 342 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 336 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cmu08g1400 342 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2729 Cmu-Chr5:35793204 Cmu08g1400 Cmu-Chr8:26158467 2.30E-28 dispersed
Cmu08g1400 Cmu-Chr8:26158467 Cmu09g1351 Cmu-Chr9:19959574 2.10E-70 dispersed
Cmu01g1940 Cmu-Chr1:32742786 Cmu08g1400 Cmu-Chr8:26158467 1.90E-60 wgd
Cmu05g1910 Cmu-Chr5:28988951 Cmu08g1400 Cmu-Chr8:26158467 2.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6712 PF05142 DUF702 5.20E-68 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1400 K27807 - csv:101213154 534.258