Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1406 ATGTGGAGTTCATTAGAATGTGGGAGACAACCCCAAAACAAAATTCAACCTTACAAACAGTATAAAGAGACCCCATCATCTCTTTTATTCCACAATGGGACCCTCCCCAAGTCTTTCCTCTACCCATATTTATACCTCTTCAACCTTCTCTTCCTTCCACCATCTTCTTCTTCTTTCTTTCTTTCTTTCTCCTCCTCCTCCTCCTTAAGCTCGCCATCAATGGCGGACGCAGGCTCCGTCTCCCACAAGAGAATGTCGTGTTCTATCCCCGAGAGGTTCCAGCTCCATGCGGCCATGTTGGCCTTGCAATTCGGCTATGCCGGTTTCCATGTCGTCTCTAGAGCTGCTCTCAACATGGGCATCAGTAAACTTGTCTTCCCTGTCTACCGAAACGTCATCGCTTTACTCCTCCTCCTCCCCTTCGCATATTTCATCGAAAAGAAAGATAGGCCTGCACTCACTGTCAACTTTGTCCTTCAGTTCTTCCTACTCGCTCTTGTTGGAATTACAGCCAATCAAGGGTTTTATTTGTTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAAAATTCTGTCCCTGCCATTACTTTCCTCATGGCTGCACTTCTCAGGATTGAGCAAGTGCGACTGAACCGAAAAGATGGGATAGCGAAGGTGATGGGTACAATATGTTGCGTAGCCGGAGCGACGGTGATCACGTTATACAAAGGGCCCACCATCTACAGCCCAGCAACGACAACGGTGATGATACAAGAGACAGCAGAGACGGCGGGGACGATGCTGATGGGGCCAGGAATGTTCCCGTCGTTAGGTGACGCAAAGGGGAAAAGCTGGACGTTAGGGTGCGTTTACTTGATCGGACACTGCTTGTCGTGGTCGGCGTGGCTAGTCCTACAAGCACCGGTGCTGAAAAAATATCCGGCTCGCCTCTCAGTTACCTCCTTCACTTGCTTCTTTGGCCTCATCCAATTCCTCATCATCGCCCTCGCCTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCTGAAGCCTTTAGCATCGTTTATGCTGGGGTGGTGGCTTCGGGGATAGCGTTTGCTGTACAGATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTTGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTATTTGGGAGGGATCATAGGAGCGGTGCTGATTATATCAGGACTCTACCTTGTGCTATGGGGAAAGAGCGAAGAAAAGAAGATCTTATTGGAAAGAGCTGTGATCCAGTCCGCCCCGGACCACGGCAGCAGCAGAACAAGTAGCCACGTCAAGCCGTCCATTACCCAGCCACTTCTCCATCCTACGGCTGACAATGTTTGA 1407 50.53 MWSSLECGRQPQNKIQPYKQYKETPSSLLFHNGTLPKSFLYPYLYLFNLLFLPPSSSSFFLSFSSSSSLSSPSMADAGSVSHKRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFIEKKDRPALTVNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTTVMIQETAETAGTMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFLIIALAFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKILLERAVIQSAPDHGSSRTSSHVKPSITQPLLHPTADNV 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26226469 26230827 + CmPI595203_08g014060.1 Cmu08g1406 422892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1406 468 PANTHER WAT1-RELATED PROTEIN 97 440 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu08g1406 468 SUPERFAMILY Multidrug resistance efflux transporter EmrE 129 239 - -
Cmu08g1406 468 Pfam EamA-like transporter family 100 236 IPR000620 GO:0016020(InterPro)
Cmu08g1406 468 Pfam EamA-like transporter family 283 421 IPR000620 GO:0016020(InterPro)
Cmu08g1406 468 SUPERFAMILY Multidrug resistance efflux transporter EmrE 325 425 - -
Cmu08g1406 468 MobiDBLite consensus disorder prediction 441 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1406 Cmu-Chr8:26226469 Cmu10g2382 Cmu-Chr10:30243126 4.50E-63 dispersed
Cmu01g0129 Cmu-Chr1:1194241 Cmu08g1406 Cmu-Chr8:26226469 1.30E-57 transposed
Cmu03g1234 Cmu-Chr3:7053663 Cmu08g1406 Cmu-Chr8:26226469 1.00E-56 transposed
Cmu06g1512 Cmu-Chr6:26391978 Cmu08g1406 Cmu-Chr8:26226469 6.70E-110 transposed
Cmu11g1598 Cmu-Chr11:28284051 Cmu08g1406 Cmu-Chr8:26226469 2.90E-61 transposed
Cmu05g1911 Cmu-Chr5:29014223 Cmu08g1406 Cmu-Chr8:26226469 2.00E-165 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1406 - - - 0.0