Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1461 ATGGTATCAGCAGAGAATAATTCTCAATCGGCGAAGGTTGTAGCATCTTCCTCGCCGGGAGGTGAAATCGAGATCATCGACTCCGTGACTCCGGCGAAGAAGAAGCGGAATCTCCCAGGGATGCCAGATCCGGCGGCGGAGGTTATAGCTCTGTCGCCAAAATCACTTCTAGCAACGAACCGATTCGTGTGCGAGATCTGCAACAAAGGATTCCAGCGAGACCAGAACCTGCAGCTTCACCGGCGTGGCCACAACTTACCTTGGAAGCTCCGGCAACGGACGAGCAATGAGATTCGAAAACGAGTTTACGTCTGTCCGGAGCCTTCTTGCGTTCATCATAATCCGGCTAGGGCACTAGGCGATCTAACTGGCATTAAAAAGCACTTCTCCAGAAAGCACTGCGAGAAGAAATGGAAGTGCGAACGGTGCTCGAAGAAATACGCCGTTCAATCGGATTGGAAGGCGCATATGAAAACCTGTGGAACTAGAGAATATAAATGCGATTGCGGAACTTTATTTTCTAGGAGAGATAGTTTCATCACCCATCGGGCTTTTTGTGATGCTTTGGCGTTTGCAAGCTCGGATTCCAATGTGATGGCTACCGCTGCTGCCGCCGGCGTGGCGGTTACTTCTTCGGCATTGGCCACCGTGCCGCTATCTCCTGCTTTGTCAATTCAAAGCTCAGAAGCACCGGACATTCCCATGGGACCTCCGCCATTAACACCGGCAGCGACAAGCTTAACCTCGGCCGTGGCCTGCAACGTCAACAAAACCAGCCCAACTAACGGCGGTGGTACAAGCGTTTTCGCGGGTGTATTTGCTTCTTCTCCTCCCATTGTTACCAGTGCTGCTGCCCCAAATCCGCCCCATCCACTCACCACCGCCGTCAGCCGATCAGAAGGCGGCAATGAACCCCTAACCACCGTCATTGAGCCCACATCGCTCTCTCTCTCAACGTCCCTTTTCCTCTCCTGTAGAGCCTCAGCCTCATCGGGCTCAACCTCAGCCTCTTCCATTTTTCAAAACCATCCTCCACATTACTCACCGTCGCTCCAGCCCGCCGCCATGTCCGCAACCGCCCTGCTGCAGAAGGCTGCCCAAATGGGCGTCACCAGCTCCAACGCCTCCTCTTTGCTTCGTGCCTCTGGGCTGTCACTGTCACCGTCTCCCGGCCCCACCATCTCCATGACGGCTGGGCTCGGACTTGGATTTGGGAGCGAGCCCACCACGCGGGACCTCCTAGGACTGGGCATGGGCGGCGGCGGAGGAGGAGGAGGTGGGGTTTCCGGCGGCGGTCTTTCTGCTCTTTTCACGTCCTTTGATGGATGTGACGTTGAAGCTGCTTCGCCTTACGGAGGCGGGGGGAATAATGGGCTATGA 1380 55.51 MVSAENNSQSAKVVASSSPGGEIEIIDSVTPAKKKRNLPGMPDPAAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSNEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHCEKKWKCERCSKKYAVQSDWKAHMKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAFASSDSNVMATAAAAGVAVTSSALATVPLSPALSIQSSEAPDIPMGPPPLTPAATSLTSAVACNVNKTSPTNGGGTSVFAGVFASSPPIVTSAAAPNPPHPLTTAVSRSEGGNEPLTTVIEPTSLSLSTSLFLSCRASASSGSTSASSIFQNHPPHYSPSLQPAAMSATALLQKAAQMGVTSSNASSLLRASGLSLSPSPGPTISMTAGLGLGFGSEPTTRDLLGLGMGGGGGGGGGVSGGGLSALFTSFDGCDVEAASPYGGGGNNGL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26654586 26657437 + CmPI595203_08g014610.1 Cmu08g1461 422947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1461 459 Gene3D Classic Zinc Finger 117 193 - -
Cmu08g1461 459 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cmu08g1461 459 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Cmu08g1461 459 Gene3D Classic Zinc Finger 62 105 - -
Cmu08g1461 459 MobiDBLite consensus disorder prediction 281 308 - -
Cmu08g1461 459 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
Cmu08g1461 459 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Cmu08g1461 459 FunFam protein indeterminate-domain 12-like 41 109 - -
Cmu08g1461 459 SMART c2h2final6 138 158 IPR013087 -
Cmu08g1461 459 SMART c2h2final6 62 84 IPR013087 -
Cmu08g1461 459 SMART c2h2final6 103 133 IPR013087 -
Cmu08g1461 459 MobiDBLite consensus disorder prediction 292 308 - -
Cmu08g1461 459 Pfam Zinc-finger of C2H2 type 62 84 IPR013087 -
Cmu08g1461 459 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
Cmu08g1461 459 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cmu08g1461 459 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 196 - -
Cmu08g1461 459 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 377 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1315 Cmu-Chr4:27452547 Cmu08g1461 Cmu-Chr8:26654586 4.90E-59 dispersed
Cmu07g0903 Cmu-Chr7:22952426 Cmu08g1461 Cmu-Chr8:26654586 8.20E-90 dispersed
Cmu08g1461 Cmu-Chr8:26654586 Cmu09g0587 Cmu-Chr9:5392499 4.60E-81 dispersed
Cmu04g1077 Cmu-Chr4:25352290 Cmu08g1461 Cmu-Chr8:26654586 2.80E-60 transposed
Cmu01g1872 Cmu-Chr1:32295810 Cmu08g1461 Cmu-Chr8:26654586 1.90E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6718 PF12874 zf-met 0.0032 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1461 K25869 - csv:101217471 728.398