Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1485 ATGTTTTCCTCCACAACCCACCATAGCCATTGGAATAATTTCATCATGGACTACACCACCACCGCCCCACCGCCGCCGCCATTGCCAGACCTTTCCTTACACATAAGTCCACCGTCGGATTCCGGCAATCATTATTTGAAAAACCAGCAACCTCAAATCTATGGAAGCCATTTGAAGAGAGGGGCAAAAATGGGATTTGGGATTAAAAGAAGCATTAGAGCTCCAAGAATGAGATGGACTACTACTCTTCATGCCCATTTTGTCCATGCCGTTCAGCTCCTTGGCGGCCATGAAAGGGCAACACCAAAATCAGTATTGGAGCTGATGAATGTGAAGGATCTAACCCTAGCTCATGTAAAGAGCCATTTACAGATGTATAGAACAGTGAAAAGCACTGACAAAGCAACTGACTCAGCCATGAAGAACCAAAGGCAAGAAATTGAAGCAAGTGGTGTTTCGAATTGTGAGAATTCTAAACCACCACTTACAATGTGGAAAAGCCCCAATCAACAAATGAAATTGTTCTGTTCATCAATGGAGACAAATCAAGAGATGACGAGCAGATGGAGTCAACTTTGCAACAATAGTATTGGAAACAACCAGGAGCAGGAGAAGGACCGACACAATGGAAATGCAAATATGAAAATCTCGAGTGGTGTGAAGAAGCAGAATAATAATAATAATAATAGTAATAATAATATTAACTTAGACTTCACTTTGGGATGCCCTAATTCTCTAACAATCCATTCTAATCCTCACTCTTCATCTACTGAACTCCCTCTTCTCAAATGCTAA 795 41.38 MFSSTTHHSHWNNFIMDYTTTAPPPPPLPDLSLHISPPSDSGNHYLKNQQPQIYGSHLKRGAKMGFGIKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKATDSAMKNQRQEIEASGVSNCENSKPPLTMWKSPNQQMKLFCSSMETNQEMTSRWSQLCNNSIGNNQEQEKDRHNGNANMKISSGVKKQNNNNNNSNNNINLDFTLGCPNSLTIHSNPHSSSTELPLLKC 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26818348 26821322 - CmPI595203_08g014850.1 Cmu08g1485 422971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1485 264 MobiDBLite consensus disorder prediction 146 166 - -
Cmu08g1485 264 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 44 244 IPR044847 GO:0000976(PANTHER)|GO:0000976(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0010158(InterPro)
Cmu08g1485 264 Pfam Myb-like DNA-binding domain 76 127 IPR001005 -
Cmu08g1485 264 NCBIfam myb-like DNA-binding domain, SHAQKYF class 75 128 IPR006447 GO:0003677(InterPro)
Cmu08g1485 264 FunFam Myb family transcription factor 73 131 - -
Cmu08g1485 264 SUPERFAMILY Homeodomain-like 72 129 IPR009057 -
Cmu08g1485 264 Gene3D - 74 131 - -
Cmu08g1485 264 MobiDBLite consensus disorder prediction 196 232 - -
Cmu08g1485 264 MobiDBLite consensus disorder prediction 212 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1485 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1485 Cmu-Chr8:26818348 Cmu09g1113 Cmu-Chr9:11461753 1.80E-32 dispersed
Cmu05g2006 Cmu-Chr5:29794654 Cmu08g1485 Cmu-Chr8:26818348 5.90E-36 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0357 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.6e-88 322.4
Cmu09g2179 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.2e-42 168.3
Cmu02g1871 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cmu07g0272 . 87 235 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cmu01g2051 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cmu09g1113 . 202 406 G2-like Transcription Factor Family AT5G16560 51.7 7.1e-41 165.2
Cmu05g2006 . 1 167 G2-like Transcription Factor Family AT5G42630 58.3 7.4e-40 161.0
Cmu08g1485 . 50 136 G2-like Transcription Factor Family AT5G42630 83.9 1.3e-36 150.2
Cmu05g2357 . 19 256 G2-like Transcription Factor Family AT1G25550 55.4 5.5e-53 204.9
Cmu08g0469 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 6.1e-52 201.4
Cmu03g0752 . 1 269 G2-like Transcription Factor Family AT3G46640 51.7 3.2e-60 229.2
Cmu04g0625 . 1 301 G2-like Transcription Factor Family AT5G05090 57.1 4.2e-74 275.0
Cmu10g2389 . 1 283 G2-like Transcription Factor Family AT5G05090 53.8 6.9e-69 257.7
Cmu05g0357 . 12 302 G2-like Transcription Factor Family AT3G24120 63.1 2.6e-88 322.4
Cmu09g2179 . 16 176 G2-like Transcription Factor Family AT3G24120 59.8 6.2e-42 168.3
Cmu02g1871 . 22 192 G2-like Transcription Factor Family AT3G24120 54.6 4.4e-40 162.2
Cmu07g0272 . 87 235 G2-like Transcription Factor Family AT3G24120 54.9 9.8e-40 161.0
Cmu01g2051 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.5e-37 152.5
Cmu11g0984 . 1 228 G2-like Transcription Factor Family AT1G69580 56.0 1.2e-49 194.1
Cmu09g2179 . 1 390 G2-like Transcription Factor Family AT1G79430 53.5 4.6e-84 308.5
Cmu02g1871 . 1 181 G2-like Transcription Factor Family AT1G79430 85.8 7.3e-74 274.6
Cmu01g2050 . 102 344 G2-like Transcription Factor Family AT2G01060 62.3 2.1e-56 216.1
Cmu04g0625 . 1 301 G2-like Transcription Factor Family AT3G10760 63.0 1.2e-91 333.6
Cmu10g2389 . 1 283 G2-like Transcription Factor Family AT3G10760 57.8 5.2e-82 301.6
Cmu04g0625 . 1 203 G2-like Transcription Factor Family AT2G40970 60.2 2.5e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012530 0 1 0 0 0 1 3 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6721 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cmu TF