Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1513 ATGGGGATCGCAAACCTCTCATATGAGGAATGTCGTCGCAAGAGACTCGAAGAAAACAAGAAGCGAATGGAAGCCCTAAATTTGCCCTTGCTTTCTCAAGCTCTCCTCGATTCTTCCCCTTCCAAGTCCTCACCTAGTAAGCTCACCAAGCCTCGCGTGACTCAGAAACAACTCGTGGTGGTGAGGAGGTCCAGTCGCGTAGCGAAACAGTCAGCCCCTGTTTACGCCGAAGTTGTTGTAAATCGCGTGGTGATTCCTAGAAGGATCTCTAAAGCTAGAGATTTTTCAAATCGGGTTTATGCTTCGGATGACGCAAGAAAAAATGCTTTTGAAAGAGCTGAGCAACTACAATCTGGGTTGGATCCGAATTATCCCAACTTTATAAAGTCAATGCTTCAGTCTCATGTTAGTGGTGGTTTTTGGCTGGGCCTTCCTTCTCATTTCTGCAAGATCCATCTTCCAAATCGTGATGGAGTCATGACTTTAATAGATGAAGATGGCGATGAGTATTCGACTATATATTTAGCACGAAAAACAGGACTTAGTGGCGGATGGAAGGGTTTTTCCGTTGCTCATAAGTTGGCAGATGGGGATGCTGTAGTTTTTCAATTCATTAAACCTACAAGATGCAAGGTGTACATTCTTAGGGCGAATAGTTCCAGACAAGATAGCGATTCTAACAGTAGCTAA 690 44.2 MGIANLSYEECRRKRLEENKKRMEALNLPLLSQALLDSSPSKSSPSKLTKPRVTQKQLVVVRRSSRVAKQSAPVYAEVVVNRVVIPRRISKARDFSNRVYASDDARKNAFERAEQLQSGLDPNYPNFIKSMLQSHVSGGFWLGLPSHFCKIHLPNRDGVMTLIDEDGDEYSTIYLARKTGLSGGWKGFSVAHKLADGDAVVFQFIKPTRCKVYILRANSSRQDSDSNSS 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26997796 26999654 + CmPI595203_08g015130.1 Cmu08g1513 422999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1513 229 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 219 IPR044837 -
Cmu08g1513 229 Coils Coil 6 26 - -
Cmu08g1513 229 ProSiteProfiles B3 DNA-binding domain profile. 127 218 IPR003340 GO:0003677(InterPro)
Cmu08g1513 229 SUPERFAMILY DNA-binding pseudobarrel domain 120 218 IPR015300 -
Cmu08g1513 229 Gene3D - 102 219 IPR015300 -
Cmu08g1513 229 SMART B3_2 127 218 IPR003340 GO:0003677(InterPro)
Cmu08g1513 229 CDD B3_DNA 125 216 IPR003340 GO:0003677(InterPro)
Cmu08g1513 229 Pfam B3 DNA binding domain 127 217 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1278 Cmu-Chr2:26000596 Cmu08g1513 Cmu-Chr8:26997796 6.80E-30 dispersed
Cmu05g1103 Cmu-Chr5:10432479 Cmu08g1513 Cmu-Chr8:26997796 1.70E-33 dispersed
Cmu08g1513 Cmu-Chr8:26997796 Cmu02g0623 Cmu-Chr2:6066458 1.30E-63 dispersed
Cmu08g1512 Cmu-Chr8:26987211 Cmu08g1513 Cmu-Chr8:26997796 8.50E-97 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6726 PF02362 B3 3.60E-13 CL0405 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1513 - - - 0.0