Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1538 ATGGATATGGCGGACGCGGAGCATGCAAGTAAGTGGGGAAGAGAGGAGATGGATATTGTGAGTGTGATTGAGCAGATGGGAAAATTTGGAGAGAATTTAGAATATAATGAAGTGGCAGCTTCTTCTTCGGATTTTGCTTTTGGTAGTCCCAATATTGGTGTAACTGTAACTACTTCCACTTCACCTCCCATTTTTCCTTCTTTTAATAATCTCCCACCATCCACCGCCCTTTCAATCAGTAACGCCACTGCACCACCGCCTTTTCCACCCTATTCCGCCGCTGCCCGCTCCAGATACCATCTTCCCGCCACCCCAATTTCTGGCATGAAGGGAGAGGGGAAGGAATCAGAGTCAATGGGAGCGATGAGGGAGATGATATACAGAATAGCAGCGATGCAGCCAATAGAGATAGACCCAGAAGCGGTGAAACCACCAAAGCGTCGGAATGTTAAAATTTCAAAAGATCCTCAGAGTGTAGCGGCCAGGCTTAGAAGAGAGAGAATAAGCGAAAGAATTAGAATTCTTCAAAGAATTGTCCCCGGCGGCACCAAAATGGACACGGCCTCCATGTTAGACGAGGCCATTCATTACCTCAAGTTCTTGAAAAACCAACTTCATTCACTCCAAATTGCCGCCGCCGCCGCCACCAACCACCCCCCCTCCGCCGCCGCCTACCCCTTTCCCACCGCCATCTTCTCTGCTGGGACTACTAATTATAATAAAAAACATCACTACCTGGAGGATGCTTCATTTTAA 756 48.02 MDMADAEHASKWGREEMDIVSVIEQMGKFGENLEYNEVAASSSDFAFGSPNIGVTVTTSTSPPIFPSFNNLPPSTALSISNATAPPPFPPYSAAARSRYHLPATPISGMKGEGKESESMGAMREMIYRIAAMQPIEIDPEAVKPPKRRNVKISKDPQSVAARLRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKFLKNQLHSLQIAAAAATNHPPSAAAYPFPTAIFSAGTTNYNKKHHYLEDASF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27224156 27225262 - CmPI595203_08g015380.1 Cmu08g1538 423024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1538 251 FunFam BHLH transcription factor 155 219 - -
Cmu08g1538 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 210 IPR036638 GO:0046983(InterPro)
Cmu08g1538 251 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 90 235 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1538 251 Pfam Helix-loop-helix DNA-binding domain 161 202 IPR011598 GO:0046983(InterPro)
Cmu08g1538 251 SMART finulus 158 207 IPR011598 GO:0046983(InterPro)
Cmu08g1538 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 201 IPR011598 GO:0046983(InterPro)
Cmu08g1538 251 Coils Coil 198 218 - -
Cmu08g1538 251 Gene3D - 149 211 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1272 Cmu-Chr2:25901469 Cmu08g1538 Cmu-Chr8:27224156 4.80E-38 dispersed
Cmu07g1327 Cmu-Chr7:28572543 Cmu08g1538 Cmu-Chr8:27224156 9.30E-23 dispersed
Cmu08g1538 Cmu-Chr8:27224156 Cmu09g0035 Cmu-Chr9:654110 1.70E-29 dispersed
Cmu08g1538 Cmu-Chr8:27224156 Cmu08g1543 Cmu-Chr8:27280507 1.20E-06 proximal
Cmu01g1502 Cmu-Chr1:28538282 Cmu08g1538 Cmu-Chr8:27224156 1.30E-36 transposed
Cmu05g2059 Cmu-Chr5:30274809 Cmu08g1538 Cmu-Chr8:27224156 9.30E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6728 PF00010 HLH 1.60E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1538 - - - 0.0