Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1547 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA 693 47.19 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27305111 27306012 - CmPI595203_08g015470.1 Cmu08g1547 423033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1547 230 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Cmu08g1547 230 Gene3D - 95 162 - -
Cmu08g1547 230 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Cmu08g1547 230 CDD homeodomain 96 157 IPR001356 GO:0003677(InterPro)
Cmu08g1547 230 MobiDBLite consensus disorder prediction 64 102 - -
Cmu08g1547 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 230 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cmu08g1547 230 Pfam Homeodomain 96 155 IPR001356 GO:0003677(InterPro)
Cmu08g1547 230 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Cmu08g1547 230 FunFam WUSCHEL-related homeobox 4 95 162 - -
Cmu08g1547 230 MobiDBLite consensus disorder prediction 153 183 - -
Cmu08g1547 230 MobiDBLite consensus disorder prediction 75 102 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1547 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1103 Cmu-Chr4:25643002 Cmu08g1547 Cmu-Chr8:27305111 1.30E-23 dispersed
Cmu06g1492 Cmu-Chr6:26204159 Cmu08g1547 Cmu-Chr8:27305111 7.00E-23 dispersed
Cmu08g1547 Cmu-Chr8:27305111 Cmu11g0636 Cmu-Chr11:6971518 7.10E-22 dispersed
Cmu08g1547 Cmu-Chr8:27305111 Cmu03g0781 Cmu-Chr3:2000238 4.00E-25 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu04g1103 . 1 195 Wox Gene Family AT3G18010 57.2 3.0e-48 189.5
Cmu06g1492 . 1 176 Wox Gene Family AT3G18010 53.6 6.1e-41 165.2
Cmu10g0876 . 16 291 Wox Gene Family AT4G35550 51.5 3.9e-72 268.5
Cmu11g1866 . 1 271 Wox Gene Family AT4G35550 50.9 2.1e-57 219.5
Cmu08g1547 . 5 162 Wox Gene Family AT1G46480 65.1 2.5e-52 202.2
Cmu04g1103 . 1 195 Wox Gene Family AT3G18010 57.2 3.0e-48 189.5
Cmu06g1492 . 1 176 Wox Gene Family AT3G18010 53.6 6.1e-41 165.2
Cmu08g1547 . 5 162 Wox Gene Family AT1G46480 65.1 2.5e-52 202.2
Cmu10g0876 . 16 291 Wox Gene Family AT4G35550 51.5 3.9e-72 268.5
Cmu11g1866 . 1 271 Wox Gene Family AT4G35550 50.9 2.1e-57 219.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005110 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6731 PF00046 Homeodomain 9.80E-19 CL0123 Cmu TF