Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1547 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTTGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGCAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCCCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATAATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA 693 47.19 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHNGIMCKKEEGHDRTLELFPLHPERR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27305111 27306012 - CmPI595203_08g015470.1 Cmu08g1547 423033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1547 230 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Cmu08g1547 230 Gene3D - 95 162 - -
Cmu08g1547 230 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Cmu08g1547 230 CDD homeodomain 96 157 IPR001356 GO:0003677(InterPro)
Cmu08g1547 230 MobiDBLite consensus disorder prediction 64 102 - -
Cmu08g1547 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 230 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cmu08g1547 230 Pfam Homeodomain 96 155 IPR001356 GO:0003677(InterPro)
Cmu08g1547 230 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Cmu08g1547 230 FunFam WUSCHEL-related homeobox 4 95 162 - -
Cmu08g1547 230 MobiDBLite consensus disorder prediction 153 183 - -
Cmu08g1547 230 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1103 Cmu-Chr4:25643002 Cmu08g1547 Cmu-Chr8:27305111 1.30E-23 dispersed
Cmu06g1492 Cmu-Chr6:26204159 Cmu08g1547 Cmu-Chr8:27305111 7.00E-23 dispersed
Cmu08g1547 Cmu-Chr8:27305111 Cmu11g0636 Cmu-Chr11:6971518 7.10E-22 dispersed
Cmu08g1547 Cmu-Chr8:27305111 Cmu03g0781 Cmu-Chr3:2000238 4.00E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6731 PF00046 Homeodomain 9.80E-19 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1547 - - - 0.0