Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1552 ATGGTACCACCATATGAGCTTGATTCTCTTTATTGCTCAGAGGACCACTGGGAGGACGACGACGACCAAGAAGAAAGGGGTTTTCATGAGCAACCTTACTCTAATTTAACAACCGAATCGAGTTCTCCGATTCTGGCAGTGGCAGAGCAGGATCTGTTTTGGGAAAACGATGAACTAAGTTCTCTGTTCTCAAGAGAGAAGCCTAATGAACTGTTTAAAACCATTCAGATTGACCCTTCTCTTGCCGTCGCTCGACGAAGCGCCGTCGAGTGGATGCTGAAGGTTAATGCCCATTACTCTTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTGGATCGGTTTCTGTCCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGTCTCAGCTTGCTGCGGTTGCTTGTATCTCTCTTGCGGCCAAAGTAGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTGTTTGAAGCTAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTTCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATATCTCAAGGAGGCTTGGATTCAAGGACCATATCTGCTGGGAAATTCTTTGGCAGTGTGAGCGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATGGAAGAACCCCACCTCAGCGTTGAATACGATTCCCAGCTTCTTAACATCCTCGGAATCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCAAATACATCTAGAAGAAACGGCAACCAATTCATGAAACGTAAATTTGGGTCGATTCCGGGCAGCCCGAACGGCGTGATGGACGTGTCATTCAGCTACGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCAGAGCCTTTAACGAAGAAGAACAGAGCATATGGATCGGTGTCTGGGGATGGCGAAACATTTAGAACCCTCTCTTAA 1059 46.18 MVPPYELDSLYCSEDHWEDDDDQEERGFHEQPYSNLTTESSSPILAVAEQDLFWENDELSSLFSREKPNELFKTIQIDPSLAVARRSAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKDHICWEILWQCERTILSVILESDFMSFLPSVMATATMLHVFKAMEEPHLSVEYDSQLLNILGIDKGNVEECCKLISNTSRRNGNQFMKRKFGSIPGSPNGVMDVSFSYDSSNDSWSVASSVSSSPEPLTKKNRAYGSVSGDGETFRTLS 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27353605 27355000 + CmPI595203_08g015520.1 Cmu08g1552 423038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1552 352 CDD CYCLIN_AtCycD-like_rpt1 84 182 - -
Cmu08g1552 352 SUPERFAMILY Cyclin-like 54 185 IPR036915 -
Cmu08g1552 352 ProSitePatterns Cyclins signature. 85 116 IPR048258 -
Cmu08g1552 352 Gene3D - 70 185 - -
Cmu08g1552 352 Gene3D - 186 276 - -
Cmu08g1552 352 CDD CYCLIN_AtCycD-like_rpt2 187 278 - -
Cmu08g1552 352 FunFam D3-type cyclin 78 185 - -
Cmu08g1552 352 Pfam Cyclin, N-terminal domain 83 185 IPR006671 -
Cmu08g1552 352 SMART Cyclin_C_2 187 313 IPR004367 -
Cmu08g1552 352 SMART cyclin_7 90 178 IPR013763 -
Cmu08g1552 352 MobiDBLite consensus disorder prediction 20 39 - -
Cmu08g1552 352 SUPERFAMILY Cyclin-like 169 283 IPR036915 -
Cmu08g1552 352 Pfam Cyclin, C-terminal domain 187 295 IPR004367 -
Cmu08g1552 352 PANTHER CYCLINS 58 276 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cmu08g1552 352 MobiDBLite consensus disorder prediction 320 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1791 Cmu-Chr1:31602378 Cmu08g1552 Cmu-Chr8:27353605 5.90E-47 dispersed
Cmu05g1129 Cmu-Chr5:10739815 Cmu08g1552 Cmu-Chr8:27353605 8.20E-76 dispersed
Cmu08g1552 Cmu-Chr8:27353605 Cmu10g1798 Cmu-Chr10:22379054 4.70E-33 dispersed
Cmu01g1656 Cmu-Chr1:30302140 Cmu08g1552 Cmu-Chr8:27353605 2.80E-67 wgd
Cmu02g0662 Cmu-Chr2:6588004 Cmu08g1552 Cmu-Chr8:27353605 1.30E-68 wgd
Cmu05g2087 Cmu-Chr5:30474705 Cmu08g1552 Cmu-Chr8:27353605 3.40E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1552 K14505 - csv:101205442 586.26