Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1563 ATGGCCGCGGCAGATAACTGTGTCCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAACATTCAGAATGTTAATGGGTCAATGGCCCCACAGAAGAGGAAGGCCAAGTCCCAGATGACTAAATGCAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCAACGATGAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTCTGTATCTATCCATCTCTTACCTCGATAGGTTTTTATCAATGAACATCCTCAGTAGGCAAAGGCTCCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAAGCTGATATACTTAAGTCTCTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAATACCAAATCTGCAGTTGGAGTTTCTTGGTTATTACCTTGCTGAGCTTAGCTTATTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCCTCTGTTGTATTTCTTGCAAAATTTATTATCCGACCAAAGCTGCATCCTTGGGGTCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTGATTCTGTTACATGATCTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTTGCAATGATGCCTTCACCTCCCGAGATACCGTTTTCATATTTTGAAGAAGCTTAG 1122 43.76 MAAADNCVRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIQNVNGSMAPQKRKAKSQMTKCKPKKRAKVGVAPTMKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27421620 27423437 - CmPI595203_08g015630.1 Cmu08g1563 423049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1563 373 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Cmu08g1563 373 PIRSF Cyclin_A_B_D_E 1 367 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cmu08g1563 373 SMART Cyclin_C_2 239 362 IPR004367 -
Cmu08g1563 373 Pfam Cyclin, C-terminal domain 239 361 IPR004367 -
Cmu08g1563 373 CDD CYCLIN_AtCycA-like_rpt2 239 353 - -
Cmu08g1563 373 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Cmu08g1563 373 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Cmu08g1563 373 Gene3D - 108 358 - -
Cmu08g1563 373 FunFam Cyclin A1 226 358 - -
Cmu08g1563 373 SMART cyclin_7 146 230 IPR013763 -
Cmu08g1563 373 SMART cyclin_7 243 331 IPR013763 -
Cmu08g1563 373 FunFam Mitotic cyclin 6 124 224 - -
Cmu08g1563 373 Gene3D - 124 237 - -
Cmu08g1563 373 SUPERFAMILY Cyclin-like 239 364 IPR036915 -
Cmu08g1563 373 PANTHER CYCLINS 86 349 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0545 Cmu-Chr8:17436528 Cmu08g1563 Cmu-Chr8:27421620 4.00E-78 dispersed
Cmu08g1228 Cmu-Chr8:24647123 Cmu08g1563 Cmu-Chr8:27421620 1.90E-68 dispersed
Cmu08g1563 Cmu-Chr8:27421620 Cmu09g0226 Cmu-Chr9:2348197 3.30E-77 dispersed
Cmu02g0698 Cmu-Chr2:7118126 Cmu08g1563 Cmu-Chr8:27421620 3.80E-78 wgd
Cmu05g2098 Cmu-Chr5:30546512 Cmu08g1563 Cmu-Chr8:27421620 1.70E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1563 K06627 - csv:101206145 696.041