Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1564 ATGGCAATTTCTCCTCCTCCTCAACTGATTCAGTTTATCTGTATTTTCATTTTAGCTTTTGAAGCTTCACTTTCTGTTACCGTTGGATCCTCCATCTCCAACCTTGAATCAGACAGGCAATCTTTGATTTCCCTCAAGTCTGGATTCAATAATCTTAATCTTTACGACCCTTTATCTTCTTGGGATCAAAATTCATCTCCTTGCAATTGGACGGGAGTAACCTGCAATGAAGATGGTGAAAGAGTTGTTGAGCTTGATCTTTCTGGGTTGGCTCTGGCAGGGTCTCTGCATATGCAAATTGGCAATCTTTCATTCCTCAAATCCCTTCAACTTCAAAACAACCAATTAACAGGTCCAATTCCTGTTCAAATTGGCAATCTTTTCCGCTTGCAAGTTCTGAATATGAGTTTCAATTACATAAGAGGTAGCCTCCCTTTCAACATCAGTGGAATGACAGAGCTTGAGATTCTTGACTTGACTTCAAACAGAATCACAAGCCAAATTCCACCAGAACTTAGCCAATTGACAAAGCTCAAGGTTTTGAACTTGGGACAGAATCATCTCTACGGTACAATTCCCCCATCTTTTGGGAACCTTTCTTCTCTCCTAACCTTCAATTTAGGAACCAATTCAGTGAGTGGTTCAATTCCTTCTGAATTGGGTCGTCTTCAAAATTTGAAGGATTTCATGATTTCCATTAATAATTTCAGTGGCATTGTTCCCTCTACCCTTTACAACATGTCTTCACTGGTTACTTTGATATTAGCTGCCAATCGTCTTCATGGAACACTCCCCAAGGATTTTGGAGATAATCTCCCAAATCTTTTGTTCTTCAATTTCTGTTTCAATAGATTTTCAGGGACAATTCCAGAATCAATGCACAATATGACTCAAATACGAATTATACGCTTTGCTCATAACCTTTTTGAAGGCACAATCCCACCAGGTTTGGAAAATTTACCTAATCTTCAAATGTATTATATTGGACATAATAAGATCGTCAGTTCAGGTCCAAATGGGCTTAGTTTCATCTCTTCATTAACCAACAGCTCACGTCTTACTTTCATTGCTGTTGATGAAAACTATTTAGAAGGTGTGATTCCTGAATCCATTGGAAATCTTTCTAAAGTCTTTTCAAGATTATACATGGGAGGGAATCGAATTTATGGGAACATACCATCTTCAATTGGTAACCTTCGTAGCTTAACTCTGTTGAATTTGAACAAAAACTTGCTAACTGGTGAAATCCCACTTCAAATTGGCCAATTGGAGCAGTTACAATTGTTGGGGTTAGCTAAAAACCAACTCTTTGGTAGAATTCCAAGCTCATTGGGGAACCTTAGAAAATTAAACCACATTGATTTGTCAGCAAACAATCTTATTGGGAACATCCCCATTTCTTTTGGGAACTTCACAAACTTGCTTGCAATGGATTTGTCAAACAATAAACTCAGTGGGGGAATACCCAAAGAGGCTCTAAATTATCCTAGTTTGAGCATGATTTTAAATCTTTCTAACAACATGCTAAGTGGGAATTTGCCACAAGAAATTGGGTTGCTTGGAAATGTTGAAAAAATTGACATCTCTGAAAATCTCATGTCTGGCAACATTCCTCCTTCCATCGTTGGCTGCAAGAGCTTGGAGGTATTAACAATGGCCAAGAATGAATTTTCAGGTCAAATTCCAACTACCCTTGGAGAAATCAAGGGGTTGCGAGCTTTAGATCTTTCCTCCAACAAACTTTCAGGTCCCATTCCTAAGAATCTTCAAAACAGAACAGCAATACAGCTCTTGAATCTCTCATTCAACGACCTTGAAGGAGTAGTTTCGGAAGGTGAAGGAGCCAGTTTAGAAGGAAACCCAAAACTTTGCTTGCCTTCCTTATGTCAAAATAACAAACCCCACAACAAAAAAAGAATCAAAATCATATCTTTAACAGTCATCTTCTCAACATTAGCATTCTGTTTCACACTGGGAACTTGGTTTCATCTGGCTAAGAAAACGTCAAAAGCTTCACCATCATCATCAACGGATGAATTGATAAAAAGGCAACACAAAATGATCTCGTACGAGGAGATTCGAACCGGCACTGCAAATTTCAGTGAGGAAAATTTGGTGGGAAAAGGAAGTTTTGGGTCAGTTTACAAAGGGTATCTAAATCTAAATGGAATAGAAGGGGGAGTTTTTGCAATCAAAGTGTTGAACATTGAACGAAGTGGGTATATTAAGAGCTTTTTGGCGGAGTGTGAAGCATTGAGAAACGTGAGGCATAGGAATTTAGTGAAGCTCATTACATCTTGCTCGAGTATAAACTATGAAGGGAGGGATTTTAGAGGTTTGGTTTATGAGTTTTTGTGTAATGGAAGCTTGGAGGAGTGGATTCATGGGGAAAGGCATCACTTGGATGGAAGTGGGCTGGATTTAATGGAGAGATTGAACATTGGGATTGATGTTGGGTGTGCTTTGGAGTATCTTCACCATGGCTGTCAAGTGCCAATTGTTCACTGTGATTTGAAGCCTAGTAACATTCTGTTGGGGGAAGATATGAGTGCAAAAGTTGGGGACTTTGGGTTGGCCAGGTTGTTGATGGAAAATGAAGCAAATCAATATTTTTCCATCACTTCCTCTCGTGTTCTTAAAGGTTCCATTGGTTACATTCCTCCAGAATACGGCATGGGAAGAACGGCAACGGTGGCCGGAGATGTTTATAGTTTCGGGATAACTCTGTTGGAGCTTTTTACTGGGAAGAGTCCGACCGATGAAAGATTTACCGAAGAACAAAATCTAATTAGATGGGCTCAATCCACTTATTCGACACATTTGATGCAAACAATTGGATCTCCTAATAACCAATTAAGCCTAATTGGGTTCCATTCCCACTGCGAAGGTCGACAGATTAGTGAACATAACCAAATGGATTGCTTGATTGAAGTCATCGACGTTGCCATCTCTTGCGCCGCTCATTCCGCTAATGAACGCATTACCATTAAGGATGCCCTTTTGAGGCTTCAAAATGCTAGAAATTCCATGTTGAGAGTGAGTTAG 3045 39.51 MAISPPPQLIQFICIFILAFEASLSVTVGSSISNLESDRQSLISLKSGFNNLNLYDPLSSWDQNSSPCNWTGVTCNEDGERVVELDLSGLALAGSLHMQIGNLSFLKSLQLQNNQLTGPIPVQIGNLFRLQVLNMSFNYIRGSLPFNISGMTELEILDLTSNRITSQIPPELSQLTKLKVLNLGQNHLYGTIPPSFGNLSSLLTFNLGTNSVSGSIPSELGRLQNLKDFMISINNFSGIVPSTLYNMSSLVTLILAANRLHGTLPKDFGDNLPNLLFFNFCFNRFSGTIPESMHNMTQIRIIRFAHNLFEGTIPPGLENLPNLQMYYIGHNKIVSSGPNGLSFISSLTNSSRLTFIAVDENYLEGVIPESIGNLSKVFSRLYMGGNRIYGNIPSSIGNLRSLTLLNLNKNLLTGEIPLQIGQLEQLQLLGLAKNQLFGRIPSSLGNLRKLNHIDLSANNLIGNIPISFGNFTNLLAMDLSNNKLSGGIPKEALNYPSLSMILNLSNNMLSGNLPQEIGLLGNVEKIDISENLMSGNIPPSIVGCKSLEVLTMAKNEFSGQIPTTLGEIKGLRALDLSSNKLSGPIPKNLQNRTAIQLLNLSFNDLEGVVSEGEGASLEGNPKLCLPSLCQNNKPHNKKRIKIISLTVIFSTLAFCFTLGTWFHLAKKTSKASPSSSTDELIKRQHKMISYEEIRTGTANFSEENLVGKGSFGSVYKGYLNLNGIEGGVFAIKVLNIERSGYIKSFLAECEALRNVRHRNLVKLITSCSSINYEGRDFRGLVYEFLCNGSLEEWIHGERHHLDGSGLDLMERLNIGIDVGCALEYLHHGCQVPIVHCDLKPSNILLGEDMSAKVGDFGLARLLMENEANQYFSITSSRVLKGSIGYIPPEYGMGRTATVAGDVYSFGITLLELFTGKSPTDERFTEEQNLIRWAQSTYSTHLMQTIGSPNNQLSLIGFHSHCEGRQISEHNQMDCLIEVIDVAISCAAHSANERITIKDALLRLQNARNSMLRVS 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27426944 27431126 - CmPI595203_08g015640.1 Cmu08g1564 423050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1564 1014 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515(InterPro)
Cmu08g1564 1014 Gene3D Ribonuclease Inhibitor 343 635 IPR032675 -
Cmu08g1564 1014 FunFam Leucine-rich repeat receptor-like protein kinase 35 194 - -
Cmu08g1564 1014 Gene3D Ribonuclease Inhibitor 33 185 IPR032675 -
Cmu08g1564 1014 Gene3D Ribonuclease Inhibitor 186 245 IPR032675 -
Cmu08g1564 1014 SUPERFAMILY Protein kinase-like (PK-like) 675 1003 IPR011009 -
Cmu08g1564 1014 ProSiteProfiles Protein kinase domain profile. 700 1011 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1564 1014 FunFam Leucine-rich repeat receptor-like protein kinase TDR 209 500 - -
Cmu08g1564 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 671 784 - -
Cmu08g1564 1014 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 514 609 - -
Cmu08g1564 1014 ProSitePatterns Protein kinases ATP-binding region signature. 706 732 IPR017441 GO:0005524(InterPro)
Cmu08g1564 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu08g1564 1014 Pfam Protein kinase domain 701 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1564 1014 Gene3D Transferase(Phosphotransferase) domain 1 785 1012 - -
Cmu08g1564 1014 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515(InterPro)
Cmu08g1564 1014 Gene3D Ribonuclease Inhibitor 246 342 IPR032675 -
Cmu08g1564 1014 SUPERFAMILY L domain-like 37 333 - -
Cmu08g1564 1014 PANTHER OS04G0122200 PROTEIN 50 1004 IPR051809 -
Cmu08g1564 1014 Pfam Leucine rich repeat N-terminal domain 36 76 IPR013210 -
Cmu08g1564 1014 Gene3D Phosphorylase Kinase; domain 1 662 784 - -
Cmu08g1564 1014 SMART LRR_typ_2 151 174 IPR003591 -
Cmu08g1564 1014 SMART LRR_typ_2 199 223 IPR003591 -
Cmu08g1564 1014 SMART LRR_typ_2 471 495 IPR003591 -
Cmu08g1564 1014 SMART LRR_typ_2 103 127 IPR003591 -
Cmu08g1564 1014 SMART LRR_typ_2 399 423 IPR003591 -
Cmu08g1564 1014 SMART LRR_typ_2 175 198 IPR003591 -
Cmu08g1564 1014 SMART LRR_typ_2 247 271 IPR003591 -
Cmu08g1564 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 785 1014 - -
Cmu08g1564 1014 SMART serkin_6 700 1011 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu08g1564 1014 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515(InterPro)
Cmu08g1564 1014 Pfam Leucine Rich Repeat 571 591 IPR001611 GO:0005515(InterPro)
Cmu08g1564 1014 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Cmu08g1564 1014 SUPERFAMILY L domain-like 380 626 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1564 Cmu-Chr8:27426944 Cmu08g1568 Cmu-Chr8:27445172 5.90E-129 dispersed
Cmu08g1564 Cmu-Chr8:27426944 Cmu08g1565 Cmu-Chr8:27433661 9.20E-130 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75746 PF00069 Pkinase 5.30E-37 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1564 - - - 0.0