Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1580 ATGAAAGCAGTCTCCAATCTCACTTCCTCACTTCCTCTTTCGCCCTCACCGTCACCGTCACCTTCGCACTACAGGACCACCGCGGTCTTCACTCCTCGTCGACGGATCGCTTCCTCGTTAGCCATCGGCGGCGCTTTCTCGTCGTGTCGTACACATTTGACTCGGTTTCCACAGCATCGATCTTCGTTTTCGCCTCTGCGATGCAATGTGAGAGAGACGGTGCCGGATCAAGAAATGGCGTCCACCAATGAACAAGACCCACGCATAGCCAAAATCTCCAAGGCCATTCGAGTTATCCCAGATTTTCCTAAACCAGGGATTTTGTTTCAGGATATTACAACTTTGCTTCTTGATACAAAGGCCTTCAAGGACACTATCGATTTGTTCGTGGAGAGGTACAGAGGGAAGGATATCTCTGTCGTCGCTGGAATTGAGGCGAGGGGTTTCATTTTTGGCCCTCCGATAGCTCTGGCTATTGGTGCAAAATTTGTTCCCATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACCGATAAAATAGAGATGCATGTAGGAGCTGTTGAAGCTGGGGAACGTGCTCTTGTGATAGATGATCTCATTGCAACTGGGGGAACCTTGTCTGCAGCAATAAGGCTACTTGAGCGAGTTGGCGTTGATGTGGTCGAGTGTGCATGTGTGATTGAGCTGGACGGACTAAAGGGCCGTGAACAATTGGGAGGCAGACCTCTATTCGTTCTAGTTAATGCAGCAGGATGA 786 48.98 MKAVSNLTSSLPLSPSPSPSPSHYRTTAVFTPRRRIASSLAIGGAFSSCRTHLTRFPQHRSSFSPLRCNVRETVPDQEMASTNEQDPRIAKISKAIRVIPDFPKPGILFQDITTLLLDTKAFKDTIDLFVERYRGKDISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLSAAIRLLERVGVDVVECACVIELDGLKGREQLGGRPLFVLVNAAG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27517418 27520244 + CmPI595203_08g015800.1 Cmu08g1580 423066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1580 261 Hamap Adenine phosphoribosyltransferase [apt]. 92 259 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Cmu08g1580 261 NCBIfam adenine phosphoribosyltransferase 93 257 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Cmu08g1580 261 Gene3D - 79 260 IPR029057 -
Cmu08g1580 261 MobiDBLite consensus disorder prediction 1 25 - -
Cmu08g1580 261 CDD PRTases_typeI 126 256 IPR000836 -
Cmu08g1580 261 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 81 258 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
Cmu08g1580 261 FunFam Adenine phosphoribosyltransferase 1 80 259 - -
Cmu08g1580 261 SUPERFAMILY PRTase-like 91 252 IPR029057 -
Cmu08g1580 261 Pfam Phosphoribosyl transferase domain 123 240 IPR000836 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1580 K00759 - - csv:101208231 434.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1280 Cmu-Chr8:25103604 Cmu08g1580 Cmu-Chr8:27517418 3.90E-66 dispersed
Cmu08g1580 Cmu-Chr8:27517418 Cmu10g1127 Cmu-Chr10:3859349 1.40E-74 dispersed
Cmu08g1580 Cmu-Chr8:27517418 Cmu01g0375 Cmu-Chr1:3956017 7.40E-76 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g0375 . 30 180 PRT Gene Family AT1G80050 75.5 6.4e-62 233.8
Cmu10g1127 . 30 180 PRT Gene Family AT1G80050 74.8 7.1e-61 230.3
Cmu08g1280 . 33 168 PRT Gene Family AT1G80050 80.9 8.1e-57 216.9
Cmu08g1580 . 108 257 PRT Gene Family AT1G80050 70.7 2.4e-56 215.3
Cmu08g1280 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Cmu01g0375 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cmu08g1580 . 86 223 PRT Gene Family AT5G11160 73.9 6.1e-55 210.7
Cmu10g1127 . 8 145 PRT Gene Family AT5G11160 71.0 6.3e-52 200.7
Cmu08g1580 . 79 260 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Cmu01g0375 . 7 180 PRT Gene Family AT1G27450 74.7 9.3e-73 270.0
Cmu10g1127 . 1 180 PRT Gene Family AT1G27450 70.0 6.2e-69 257.3
Cmu08g1280 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Cmu11g0387 . 73 557 PRT Gene Family AT2G16570 85.2 5.9e-243 837.0
Cmu11g0387 . 73 557 PRT Gene Family AT4G34740 86.0 1.5e-243 839.0
Cmu11g0387 . 28 530 PRT Gene Family AT4G38880 70.4 1.7e-199 692.6
Cmu08g1580 . 79 260 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Cmu01g0375 . 7 180 PRT Gene Family AT1G27450 74.7 9.3e-73 270.0
Cmu10g1127 . 1 180 PRT Gene Family AT1G27450 70.0 6.2e-69 257.3
Cmu08g1280 . 11 168 PRT Gene Family AT1G27450 73.4 3.5e-64 241.5
Cmu01g0375 . 30 180 PRT Gene Family AT1G80050 75.5 6.4e-62 233.8
Cmu10g1127 . 30 180 PRT Gene Family AT1G80050 74.8 7.1e-61 230.3
Cmu08g1280 . 33 168 PRT Gene Family AT1G80050 80.9 8.1e-57 216.9
Cmu08g1580 . 108 257 PRT Gene Family AT1G80050 70.7 2.4e-56 215.3
Cmu01g0375 . 6 104 PRT Gene Family AT4G22570 82.8 5.2e-44 173.7
Cmu10g1127 . 5 97 PRT Gene Family AT4G22570 84.9 1.7e-42 168.7
Cmu08g1580 . 84 175 PRT Gene Family AT4G22570 82.6 1.0e-39 159.5
Cmu08g1280 . 11 100 PRT Gene Family AT4G22570 78.9 2.1e-37 151.8
Cmu01g0375 . 1 96 PRT Gene Family AT4G12440 84.4 8.4e-41 162.9
Cmu10g1127 . 1 96 PRT Gene Family AT4G12440 82.3 2.7e-39 157.9
Cmu08g1580 . 79 174 PRT Gene Family AT4G12440 79.2 8.7e-38 152.9
Cmu08g1280 . 4 99 PRT Gene Family AT4G12440 78.1 3.3e-37 151.0
Cmu08g1280 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Cmu01g0375 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cmu08g1580 . 86 223 PRT Gene Family AT5G11160 73.9 6.1e-55 210.7
Cmu10g1127 . 8 145 PRT Gene Family AT5G11160 71.0 6.3e-52 200.7
Cmu08g0667 . 1 186 PRT Gene Family AT1G71750 65.0 1.8e-69 259.2
Cmu09g2056 . 88 540 PRT Gene Family AT1G55810 85.5 2.3e-226 781.6
Cmu05g1270 . 19 482 PRT Gene Family AT1G55810 73.5 1.4e-199 692.6
Cmu09g2056 . 137 553 PRT Gene Family AT3G27440 75.4 2.0e-184 642.1
Cmu05g1270 . 80 482 PRT Gene Family AT3G27440 75.4 8.9e-180 626.7
Cmu05g1270 . 1 482 PRT Gene Family AT3G27190 86.1 9.7e-247 849.4
Cmu09g2056 . 84 539 PRT Gene Family AT3G27190 75.5 6.8e-208 720.3
Cmu04g0825 . 3 288 PRT Gene Family AT3G53900 66.1 5.4e-107 384.4
Cmu09g2056 . 74 540 PRT Gene Family AT4G26510 84.7 6.6e-232 800.0
Cmu05g1270 . 11 482 PRT Gene Family AT4G26510 75.8 7.1e-210 726.9
Cmu05g1270 . 1 482 PRT Gene Family AT5G40870 86.3 9.8e-247 849.4
Cmu09g2056 . 84 542 PRT Gene Family AT5G40870 74.2 1.3e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139