Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1591 ATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTTGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCGACGAGAGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTGAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTAAACTACGAGGAAGCCCGAGCTTTGCTGGGGAGACTTGAATATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAAGGAATAGACATTAGATCTTTGACGCCAAGAATGGTTAAGGCAATCACTGAAAAGATAAGAGAGTATAAGCCTCGTCCTAAAGGTGACAATGCCCTCCCTAGTGGTGTAATGTCCATGCATTCTGTTAGCCTACTACTTGAGGCAATTTTACTCAAGGCAAAATCACTGGAGGAACTTGGCAAATATATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGATACAGTGGAATCAGCTCTGCCTAATGGAATGCCCGAGTGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTGCCTACTTTGTGGATTAAGGGAGGGTATCTTGATGAGGCCATAAACGCCTATCGCCGTGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCCCTTAAGTTTCATGTATTTGGTCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTCTGTTGCTAATACTCATGAGGAAAGTGGTGATGCAGGAAATAAACTGGGATCCTGAGATTATGAATCATCTGACTTATGCACTTTCTATCACAAGACAATTTGAATTACTCGCTGAGCATGTAGAGCGGATCCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTATGTTACAATGCAGCAGGACAGAATGAAGCAGCTTTGAACCTTCTAATGAAAGTTTGCGGTTCCTCTGAAGTAAAGCACAAGCCCCATTTTCATTCTATTTTGTTGCTTGCAAAATTGTGTTCGGAGGATACAAAATATGCACGTGATGGAATTAAATTTGCTCATAGAATGATCAATATGGACAGTGAACAAGGTAAGCATTTCAATCCTGAAGCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCTAGAGCGTCTGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTACGAGTTTCTTCTCTCGATAGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCGGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGTTCCGGAAGAGGTTGGAAGCTTTTGACCCTCATACTTTCGGCTGAGAAGCGACTCAAGGACGCTGAAAGCATAGTTGATTTTGCTTTGGATGAAGCTGAGAGGATGGACCAATTGGATTTTCTTCGATTGAAAGCTGTCCTAAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGGATCTTGCTAGCACTAATTCAAGGGCGAGATGAACTTCAGCTTCAGGCTAAGAACTTTGACCAATCCAAGGACTTGGAACTGGAGGCAGTGGCAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCCTGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTGGATGTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGCTCGATCGTTACACAAGGAAGCCCTTGTTTCATTCTCTGTCTCTCTTTCGATCGATCCTGATTATATTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATGCGGTAACCAATCACTTCCAATTGCACGTAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAGTGCTTTCCAAAATGGAAGGTCTGTTGCTACAAGCTGCAGATTTTTTTCAAGCTGCACATGAACTCCAACTATCTGCTCCTCTTCAAAGTTTCGTCTAA 2151 42.91 MLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMVKAITEKIREYKPRPKGDNALPSGVMSMHSVSLLLEAILLKAKSLEELGKYIESAKECRIILDTVESALPNGMPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAILLLLILMRKVVMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAGQNEAALNLLMKVCGSSEVKHKPHFHSILLLAKLCSEDTKYARDGIKFAHRMINMDSEQGKHFNPEAHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLDRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRLKDAESIVDFALDEAERMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQGRDELQLQAKNFDQSKDLELEAVAERNLERAAWQDLAAIYSKLASWADAEICLNKAKSLDVHCPRGWHTTGKYFEARSLHKEALVSFSVSLSIDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGVLSKMEGLLLQAADFFQAAHELQLSAPLQSFV 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27598842 27601538 + CmPI595203_08g015910.1 Cmu08g1591 423077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1591 716 SUPERFAMILY TPR-like 515 707 IPR011990 GO:0005515(InterPro)
Cmu08g1591 716 Gene3D Tetratricopeptide repeat domain 545 712 IPR011990 GO:0005515(InterPro)
Cmu08g1591 716 Coils Coil 485 505 - -
Cmu08g1591 716 SMART tpr_5 512 545 IPR019734 GO:0005515(InterPro)
Cmu08g1591 716 SMART tpr_5 318 351 IPR019734 GO:0005515(InterPro)
Cmu08g1591 716 SMART tpr_5 573 606 IPR019734 GO:0005515(InterPro)
Cmu08g1591 716 SMART tpr_5 677 710 IPR019734 GO:0005515(InterPro)
Cmu08g1591 716 SMART tpr_5 607 640 IPR019734 GO:0005515(InterPro)
Cmu08g1591 716 SUPERFAMILY TPR-like 317 545 IPR011990 GO:0005515(InterPro)
Cmu08g1591 716 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Cmu08g1591 716 Gene3D Tetratricopeptide repeat domain 258 544 IPR011990 GO:0005515(InterPro)
Cmu08g1591 716 Gene3D Tetratricopeptide repeat domain 30 243 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1591 Cmu-Chr8:27598842 Cmu11g1660 Cmu-Chr11:28846350 2.80E-149 dispersed
Cmu08g1591 Cmu-Chr8:27598842 Cmu07g0178 Cmu-Chr7:1748365 8.70E-159 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1591 K21843 - csv:101209448 1333.55