Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1610 ATGAAAATGGAGGTCACTTCTTCTGATCATCCTTACACTCAACACCATTCTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAATTCCTGATAATTCCTCTCTTCACCATCACTCTGATGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTGCCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCGACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCAGCTAATGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCAGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTTCCGGCCAGATCTCCCCTACTGGAGGTGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCAGACTGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGAGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACCAAGCAGTGATACGACCGTCGTTCCCTACGACTCCTCGGTTGCAGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGACGACAATGGTGCGAATGGGAATGGTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATTGGATCATCATCACAATAAATCCATGATTGTATCGGGAGGTTATCGAAACACTTCGTTTTCGATGGCATTGCAGGATTTGATTGGAATTGAATCGTTGAATGCTAGTACTCATGGGATTGAGGATGATGTGAGCAAACAAGTGACTCATTTTTCAAATTCATCGTCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCGTTTGGAAAACCCCCACCCTTGATGGCATCAAAGTTAATTGGTGCAACGAGCGGGGTCGGGGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA 1962 45.26 MKMEVTSSDHPYTQHHSHSASNPFYLSPHFNHNNTEIFYGIPDNSSLHHHSDAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNAESETDKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPANDDEIPCLRNWVSRSHYSATHNTLEQHITGSALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSSDTTVVPYDSSVAANNNVGIGIGIEINPDDNGANGNGNDWKMALYQNPSHQQQVCVAESLDHHHNKSMIVSGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATSGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27776424 27779375 + CmPI595203_08g016100.1 Cmu08g1610 423096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1610 653 PRINTS Ethylene responsive element binding protein signature 418 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 PRINTS Ethylene responsive element binding protein signature 277 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 ProSiteProfiles AP2/ERF domain profile. 378 436 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 SUPERFAMILY DNA-binding domain 275 344 IPR016177 GO:0003677(InterPro)
Cmu08g1610 653 CDD AP2 377 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 Gene3D AP2/ERF domain 378 438 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 Gene3D AP2/ERF domain 275 344 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 MobiDBLite consensus disorder prediction 217 238 - -
Cmu08g1610 653 FunFam AP2-like ethylene-responsive transcription factor ANT 275 344 - -
Cmu08g1610 653 CDD AP2 275 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 Pfam AP2 domain 377 428 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 Pfam AP2 domain 276 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 MobiDBLite consensus disorder prediction 1 20 - -
Cmu08g1610 653 SUPERFAMILY DNA-binding domain 377 438 IPR016177 GO:0003677(InterPro)
Cmu08g1610 653 MobiDBLite consensus disorder prediction 217 255 - -
Cmu08g1610 653 SMART rav1_2 378 442 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 SMART rav1_2 276 348 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 ProSiteProfiles AP2/ERF domain profile. 276 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu08g1610 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 173 498 - -
Cmu08g1610 653 FunFam AP2-like ethylene-responsive transcription factor 377 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1610 Cmu-Chr8:27776424 Cmu10g1578 Cmu-Chr10:12056366 1.20E-85 dispersed
Cmu05g2703 Cmu-Chr5:35529319 Cmu08g1610 Cmu-Chr8:27776424 4.90E-140 transposed
Cmu07g1382 Cmu-Chr7:29152551 Cmu08g1610 Cmu-Chr8:27776424 6.60E-111 transposed
Cmu11g0801 Cmu-Chr11:9496474 Cmu08g1610 Cmu-Chr8:27776424 1.30E-92 transposed
Cmu01g1727 Cmu-Chr1:30967935 Cmu08g1610 Cmu-Chr8:27776424 3.00E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6739 PF00847 AP2 1.50E-13 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1610 K09285 - csv:101212797 1168.68