Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu08g1610 | ATGAAAATGGAGGTCACTTCTTCTGATCATCCTTACACTCAACACCATTCTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAATTCCTGATAATTCCTCTCTTCACCATCACTCTGATGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTGCCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCGACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCAGCTAATGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCAGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTTCCGGCCAGATCTCCCCTACTGGAGGTGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCAGACTGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGAGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACCAAGCAGTGATACGACCGTCGTTCCCTACGACTCCTCGGTTGCAGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGACGACAATGGTGCGAATGGGAATGGTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATTGGATCATCATCACAATAAATCCATGATTGTATCGGGAGGTTATCGAAACACTTCGTTTTCGATGGCATTGCAGGATTTGATTGGAATTGAATCGTTGAATGCTAGTACTCATGGGATTGAGGATGATGTGAGCAAACAAGTGACTCATTTTTCAAATTCATCGTCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCGTTTGGAAAACCCCCACCCTTGATGGCATCAAAGTTAATTGGTGCAACGAGCGGGGTCGGGGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAA | 1962 | 45.26 | MKMEVTSSDHPYTQHHSHSASNPFYLSPHFNHNNTEIFYGIPDNSSLHHHSDAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNAESETDKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPANDDEIPCLRNWVSRSHYSATHNTLEQHITGSALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVEPSSDTTVVPYDSSVAANNNVGIGIGIEINPDDNGANGNGNDWKMALYQNPSHQQQVCVAESLDHHHNKSMIVSGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATSGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT | 653 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27776424 | 27779375 | + | CmPI595203_08g016100.1 | Cmu08g1610 | 423096 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu08g1610 | 653 | PRINTS | Ethylene responsive element binding protein signature | 418 | 438 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | PRINTS | Ethylene responsive element binding protein signature | 277 | 288 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | ProSiteProfiles | AP2/ERF domain profile. | 378 | 436 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | SUPERFAMILY | DNA-binding domain | 275 | 344 | IPR016177 | GO:0003677(InterPro) | |
Cmu08g1610 | 653 | CDD | AP2 | 377 | 438 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | Gene3D | AP2/ERF domain | 378 | 438 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | Gene3D | AP2/ERF domain | 275 | 344 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | MobiDBLite | consensus disorder prediction | 217 | 238 | - | - | |
Cmu08g1610 | 653 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 275 | 344 | - | - | |
Cmu08g1610 | 653 | CDD | AP2 | 275 | 342 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | Pfam | AP2 domain | 377 | 428 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | Pfam | AP2 domain | 276 | 334 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmu08g1610 | 653 | SUPERFAMILY | DNA-binding domain | 377 | 438 | IPR016177 | GO:0003677(InterPro) | |
Cmu08g1610 | 653 | MobiDBLite | consensus disorder prediction | 217 | 255 | - | - | |
Cmu08g1610 | 653 | SMART | rav1_2 | 378 | 442 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | SMART | rav1_2 | 276 | 348 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | ProSiteProfiles | AP2/ERF domain profile. | 276 | 342 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu08g1610 | 653 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 173 | 498 | - | - | |
Cmu08g1610 | 653 | FunFam | AP2-like ethylene-responsive transcription factor | 377 | 438 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1610 | Cmu-Chr8:27776424 | Cmu10g1578 | Cmu-Chr10:12056366 | 1.20E-85 | dispersed | |
Cmu05g2703 | Cmu-Chr5:35529319 | Cmu08g1610 | Cmu-Chr8:27776424 | 4.90E-140 | transposed | |
Cmu07g1382 | Cmu-Chr7:29152551 | Cmu08g1610 | Cmu-Chr8:27776424 | 6.60E-111 | transposed | |
Cmu11g0801 | Cmu-Chr11:9496474 | Cmu08g1610 | Cmu-Chr8:27776424 | 1.30E-92 | transposed | |
Cmu01g1727 | Cmu-Chr1:30967935 | Cmu08g1610 | Cmu-Chr8:27776424 | 3.00E-155 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6739 | PF00847 | AP2 | 1.50E-13 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu08g1610 | K09285 | - | csv:101212797 | 1168.68 |