Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1612 ATGGCTCCTTGGTGGGGAAGAGAAAGCCATAAAGGAACCCCTGTTGTTGTAAAGATGGAAAATCCCAACTGGTCAATAGTCGAAGTTGAAAGTCCTTCCGATGATGACTTCATCATCGGCGCCGAGTCGCCACCGGGTCGAGCCCCAGACAAGGGACGAGGCAAAAATGCCAAACAGCTCACTTGGGTTCTTCTTCTTAAAGCCCACAAAGCCGCCGGTTGTTTAACCTCCATTGGCTCTGCATTGATCAACATCGTCGCCGCCGTTAAACGCCGTCTTGCTTCTGGAAGAACCGACGCCGACGCCGACGCCGACGCTGACAACGCCGACGGCGGCGTAAGGGAGAACCCAACTGTCAAAACCAGGTTTTATTTGTTTATCAAGGTTTTCCTTTGGCTGTCGGTGCTTCTGTTAGGGTTTGAGGTGGCGGCATATTACAAAGGTTGGCATTTTAAGGCACCCCATCTTCCATTGGACTACTTATGGACAACCCCATTTGGGGTTAAGGATGTTTTTGACTGGTTTTATTCGAAATGGGTTTTGATTCGGGTTGCATATTTTGCTCCTCCTCTACAGTTTTTAGCCAATGTTTGTATAGTGTTGTTCCTTATTCAGACTTTGGATAGGCTTATTCTTTGTTTGGGTTGTTTCTGGATCCGATTCAAAAAAATCAAACCTGTTCCTAAGATTGCTGCTTTTGATCTTGAGTCTGGAGAGAGTGGCTACTTCCCTATGGTTCTTGTACAAATTCCAATGTGCAATGAGAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTGGACTGGCCAAAAGACAAGTTACTGATTCAGGTTCTTGATGACTCGGATGATCCAATCACCCAATTGCTGATCAAAGAGGAGGTATATAAATGGCAGCAACTCGATGCCAACATTGAATACCGACATCGAGTGATCCGAGAGGGCTATAAGGCTGGCAATCTCAAGTCTGCCATGAGTTGCAGCTATGTAAAAGACTATGAATTTGTTGCAATCTTTGATGCTGATTTTCAGCCTGCCTCGGATTTCCTCAAAAGAACAGTTCCTCATTTTAAGGATAATGAGGAACTAGGACTTGTTCAAGCGCGATGGTCGTTCGTCAACAAAGACGAGAACTTATTAACCAGACTGCAGAACATTAACTTAGCCTTCCATTTTGAAGTAGAGCAACAAGTGAATGGCGTGTTTCTCAATTTCTTTGGATTCAATGGTACTGCTGGAGTTTGGAGGATAAAGGCGCTTGAAGAAGCCGGTGGCTGGTTGGAGAGGACCACTGTTGAGGATATGGACATTGCTGTTCGTGCTCATCTTCATGGCTGGAAATTCATATTCCTCAATGATGTTGAGTGCCAATGTGAATTACCAGAATCGTATGAAGCATATAGAAAACAACAGCACAGATGGCATTCGGGACCGATGCAACTGTTTCGACTTTGTTTGCCTGACATAGTTCGATCAAAGATTGGCATATCAAAGAAATTCAATTTGATCTTCTTGTTCTTTCTCTTACGAAAGCTGATATTGCCATTTTATTCATTTACTCTCTTCTGCATAATTCTCCCAATGACGATGTTCGTTCCTGAAGCTGAGTTACCGGCGTGGGTTGTATGTTACATTCCAGCTACCATGTCCTTTCTCAACATCCTTCCAGCACCAAAATTCTTCCCCTTCATTGTCCCTTACCTCCTCTTTGAGAACACAATGTCAGTAACTAAGTTTAACGCAATGGTCTCAGGACTATTCCAGTTAGGTAGTGCATATGAGTGGGTCGTTACGAAGAAATCAGGCCGCTCGTCTGAGGGTGATCTTGCCTCAATGGTTGAGAAGAAAAAGCTGAACACTGAAAAGAGTGTCTCAGTAAACGACCTTGAGGAGAGTGAGTTGATCCAAAGACAGGACAAGAAGTTGCCAAGGAAGAAGCATAACAGAATATACATGAAGGAACTAGCACTGGCTTTCCTTCTTCTAACAGCATCTGCTAGAAGCCTCCTCTCAGCTCAAGGGATTCATTTCTACTTCTTGCTGTTCCAGGGTATATCCTTCCTCCTTGTCGGTCTAGACTTGATTGGCGAGCAGGTTGTTTGA 2109 44.38 MAPWWGRESHKGTPVVVKMENPNWSIVEVESPSDDDFIIGAESPPGRAPDKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSALINIVAAVKRRLASGRTDADADADADNADGGVRENPTVKTRFYLFIKVFLWLSVLLLGFEVAAYYKGWHFKAPHLPLDYLWTTPFGVKDVFDWFYSKWVLIRVAYFAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPKIAAFDLESGESGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITQLLIKEEVYKWQQLDANIEYRHRVIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPASDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGISKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLASMVEKKKLNTEKSVSVNDLEESELIQRQDKKLPRKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVV 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27794195 27796746 - CmPI595203_08g016120.1 Cmu08g1612 423098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1612 702 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 237 461 IPR029044 -
Cmu08g1612 702 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 173 701 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cmu08g1612 702 SUPERFAMILY Nucleotide-diphospho-sugar transferases 246 524 IPR029044 -
Cmu08g1612 702 Pfam Glycosyl transferase family group 2 338 546 IPR001173 -
Cmu08g1612 702 FunFam probable xyloglucan glycosyltransferase 5 237 462 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1612 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2701 Cmu-Chr5:35507859 Cmu08g1612 Cmu-Chr8:27794195 0.00E+00 dispersed
Cmu08g1612 Cmu-Chr8:27794195 Cmu09g0816 Cmu-Chr9:7896124 1.00E-244 dispersed
Cmu08g1612 Cmu-Chr8:27794195 Cmu08g0753 Cmu-Chr8:19840486 1.00E-111 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu09g1701 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.8e-57 217.2
Cmu05g2691 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cmu09g1802 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.4e-268 919.8
Cmu05g2701 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.3e-262 900.6
Cmu08g1612 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Cmu09g0816 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cmu05g2691 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cmu09g1802 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.4e-268 919.8
Cmu05g2701 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.3e-262 900.6
Cmu08g1612 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Cmu09g0816 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cmu05g2691 . 1 695 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1088.9
Cmu09g1802 . 6 666 REM Transcription Factor Family AT2G24630 69.4 8.4e-268 919.8
Cmu05g2701 . 1 707 REM Transcription Factor Family AT2G24630 64.0 5.3e-262 900.6
Cmu08g1612 . 5 700 REM Transcription Factor Family AT2G24630 66.3 1.7e-260 895.6
Cmu09g0816 . 5 692 REM Transcription Factor Family AT2G24630 62.1 4.0e-246 847.8
Cmu09g1701 . 220 382 REM Transcription Factor Family AT1G49480 70.6 8.8e-57 217.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65