Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1619 ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCCACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCTTAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAAAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTGTCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCTTTTTACTTTGATGGCCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA 981 46.08 MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQILASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFCHPNAAAAAAAAFYFDGHFMGDSHYRLGP 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27880451 27885935 - CmPI595203_08g016190.1 Cmu08g1619 423105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1619 326 CDD homeodomain 234 286 IPR001356 GO:0003677(InterPro)
Cmu08g1619 326 SMART ELK_2 202 223 IPR005539 GO:0003677(InterPro)
Cmu08g1619 326 SMART ELK_2 114 134 IPR005539 GO:0003677(InterPro)
Cmu08g1619 326 Pfam KNOX2 domain 112 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu08g1619 326 SUPERFAMILY Homeodomain-like 223 294 IPR009057 -
Cmu08g1619 326 SMART HOX_1 224 289 IPR001356 GO:0003677(InterPro)
Cmu08g1619 326 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677(InterPro)
Cmu08g1619 326 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cmu08g1619 326 Pfam ELK domain 202 223 IPR005539 GO:0003677(InterPro)
Cmu08g1619 326 Gene3D - 219 292 - -
Cmu08g1619 326 MobiDBLite consensus disorder prediction 166 197 - -
Cmu08g1619 326 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677(InterPro)
Cmu08g1619 326 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu08g1619 326 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cmu08g1619 326 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 293 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cmu08g1619 326 MobiDBLite consensus disorder prediction 174 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2599 Cmu-Chr5:34673380 Cmu08g1619 Cmu-Chr8:27880451 2.80E-64 dispersed
Cmu06g1753 Cmu-Chr6:28568968 Cmu08g1619 Cmu-Chr8:27880451 1.20E-46 dispersed
Cmu08g1293 Cmu-Chr8:25176407 Cmu08g1619 Cmu-Chr8:27880451 5.90E-23 dispersed
Cmu08g1619 Cmu-Chr8:27880451 Cmu08g1715 Cmu-Chr8:28597193 1.50E-33 dispersed
Cmu05g1806 Cmu-Chr5:28165876 Cmu08g1619 Cmu-Chr8:27880451 8.10E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6742 PF03791 KNOX2 2.50E-23 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1619 - - - 0.0