Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1620 ATGATCACCGAATCAATGCTCCTCAATCCGACGGCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCTTCTTATTTCACCGCCGGTCACGTGTCGCCCCTCGATTCGCCCACGGCGGCGCTCATGGACTTCGATTCATCCTTCTGGGAAGATCCAGACTTGCCGTCGGCTGTGGACGCCTTCTCGTGCGACCAGTTCCGGATGTATGAGTTCAAAGTCCGCACGTGCGCACGTGGGAGGTCGCACGATTGGACTAAATGTCCGTACGCTCACACCGGCGAGAAGGCTCGCCGCCGAGATCCGAGGAAGTTCAACTATTCCGGCACAGAGTGCCCGGATTTACGCCATGGGTGTTGTAAAAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAAGTTGGCTTCACCCGGACCGGTACCGGACTCAACCGTGCCGTGACGGAACCGGATGCCGACGACGGGTCTGTTTCTTCGCTCACTCGTCGGAGCAGCTCCGGATTCCGGGGAAACAGAGTCTCAGATCTCCACGGGCGAGAGAAATCGCTGTCCCTGCTGTATCATCCCCGACGTCGATCCTAATGTCGCCGTCATCGGACTCGCCGCCTATGTCTCCGATCAGCCCTGTAATCAGCGGCGGCGAATCGTTCAGTAGATTAGTCGCATTGATGCACAGTTTTCACCTGGATGAACTGAAAACGAATCCAGCCGTCTCCGGCTTCAGTCCAAGTCTCCGGCGGAACTCCGGCGCATTTGATCTGTGGGACAGAGAAAATGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTGCGAGCCCAAATGTACGCGAAATTAATGAGAGAGAATTCAGTGGACCGAGTCCGGCCACTGATATCGGCCGGATCACGGAACTAA 921 56.03 MITESMLLNPTAHISSWDSLDDPAAAIPSYFTAGHVSPLDSPTAALMDFDSSFWEDPDLPSAVDAFSCDQFRMYEFKVRTCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGTECPDLRHGCCKKGDACEYAHGVFESWLHPDRYRTQPCRDGTGCRRRVCFFAHSSEQLRIPGKQSLRSPRAREIAVPAVSSPTSILMSPSSDSPPMSPISPVISGGESFSRLVALMHSFHLDELKTNPAVSGFSPSLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLISAGSRN 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27903551 27904471 + CmPI595203_08g016200.1 Cmu08g1620 423106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1620 306 PANTHER UNKEMPT FAMILY MEMBER 52 237 IPR045234 -
Cmu08g1620 306 FunFam Zinc finger CCCH domain-containing protein 66 68 136 - -
Cmu08g1620 306 ProSiteProfiles Zinc finger C3H1-type profile. 110 137 IPR000571 GO:0046872(InterPro)
Cmu08g1620 306 SMART c3hfinal6 110 136 IPR000571 GO:0046872(InterPro)
Cmu08g1620 306 SMART c3hfinal6 145 168 IPR000571 GO:0046872(InterPro)
Cmu08g1620 306 Gene3D - 107 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1620 Cmu-Chr8:27903551 Cmu11g0187 Cmu-Chr11:2306146 8.50E-63 dispersed
Cmu03g2183 Cmu-Chr3:30337099 Cmu08g1620 Cmu-Chr8:27903551 4.10E-67 wgd
Cmu05g1809 Cmu-Chr5:28221820 Cmu08g1620 Cmu-Chr8:27903551 1.40E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1620 - - - 0.0