Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1658 ATGGATATTACTGAGGTTGAAGAAAATCTATTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAAACTCTCTCTGCAATATATTATAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGTCATTATGTTCATTGCATGTAGCACTAGAAAAAGCCAAGAACACTCTCCAACATTGTACAGAGAGTAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTCAAAGTTTGAGAAGGTAAAAAATGCTCTACAAGACAGCCTTAAACGTGTTGAAGATATTGTTCCCCAGTCAATTGGATATCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTTGGTGACGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAGCAATGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCGAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGGTCTCGCACTGAAGACGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAACTCTCTCGAGGACAGTGGAGCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAGCACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCCAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGAGTTATCTGAATCAGAGTCTCTTAATTTGTCACCTGTGGACTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTCCCACTGGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATGTAGTGGATGACATTGACAACTCTGCTGAAGACCAAGAGTCCAATGTAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCCTAAATGAAGAAGCGGACTTGAAGAAAAAGTCCGCGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCCCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAGGAAATAATGTTGGCAGAACGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGGATATGCAACGGCCCTCTATCTTAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAAACACTATGCAAACTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAAGCCCTTCTTTCAGCCCGTCGGGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTACTCCAGAGCTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAGCCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTATGCAATGGGAATGAGAGGTGCAGCGAGATGGTCCTACAGGAAGGCGTAATTCCCGGTTTGGTGTCGATGTCTGTGAACGGGACAGCAAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGGCGCCGCCACCAGCACCCACACCCACACTAACACCGACACCCATACCGACACCGACCGAACGATCAGAGAGTAGCGGGACATCTATGGCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACATCAAAAGCTTTTAGCTTTTTATGGAAAAGCAAAAGCTATTCGGTGTACCAATGCTAA 2349 43.72 MDITEVEENLFAASDAKLHGGMCKTLSAIYYKVLSIFPSLEAARPRSKSGIQSLCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFEKVKNALQDSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDSNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQNSLEDSGAGGNGQAFERQLTKIGSFTLKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHSTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLELSESESLNLSPVDSVGSCKLKDVKVVPLDENCVTEEIKGNVVDDIDNSAEDQESNVNMLARYEQYLKVLNEEADLKKKSAVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERVISLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQALLSARRDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREAPPPAPTPTLTPTPIPTPTERSESSGTSMAVAESKPLCKSISRRKTSKAFSFLWKSKSYSVYQC 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28211799 28215287 + CmPI595203_08g016580.1 Cmu08g1658 423144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1658 782 MobiDBLite consensus disorder prediction 719 733 - -
Cmu08g1658 782 SUPERFAMILY RING/U-box 279 355 - -
Cmu08g1658 782 PANTHER U BOX DOMAIN-CONTAINING 22 715 - -
Cmu08g1658 782 SUPERFAMILY ARM repeat 435 699 IPR016024 -
Cmu08g1658 782 Coils Coil 87 107 - -
Cmu08g1658 782 Pfam U-box domain 280 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu08g1658 782 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu08g1658 782 MobiDBLite consensus disorder prediction 224 247 - -
Cmu08g1658 782 Gene3D - 408 719 IPR011989 -
Cmu08g1658 782 MobiDBLite consensus disorder prediction 715 749 - -
Cmu08g1658 782 CDD RING-Ubox_PUB 280 332 IPR045210 -
Cmu08g1658 782 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Cmu08g1658 782 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu08g1658 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Cmu08g1658 782 Gene3D - 12 105 IPR036537 GO:0007166(InterPro)
Cmu08g1658 782 MobiDBLite consensus disorder prediction 222 250 - -
Cmu08g1658 782 MobiDBLite consensus disorder prediction 734 749 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1463 Cmu-Chr3:10495733 Cmu08g1658 Cmu-Chr8:28211799 4.20E-11 dispersed
Cmu05g1678 Cmu-Chr5:26823603 Cmu08g1658 Cmu-Chr8:28211799 2.00E-24 dispersed
Cmu07g0850 Cmu-Chr7:21646842 Cmu08g1658 Cmu-Chr8:28211799 2.80E-88 dispersed
Cmu08g1658 Cmu-Chr8:28211799 Cmu11g1389 Cmu-Chr11:26082089 2.80E-280 dispersed
Cmu08g1658 Cmu-Chr8:28211799 Cmu03g1336 Cmu-Chr3:8463062 9.20E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1658 - - - 0.0